View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1173_low_18 (Length: 251)

Name: NF1173_low_18
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1173_low_18
NF1173_low_18
[»] chr2 (12 HSPs)
chr2 (10-251)||(2820985-2821226)
chr2 (78-232)||(32158272-32158421)
chr2 (10-80)||(32212035-32212105)
chr2 (11-80)||(32110431-32110500)
chr2 (10-80)||(32152541-32152611)
chr2 (10-80)||(32157724-32157794)
chr2 (10-80)||(32182476-32182546)
chr2 (10-80)||(32206960-32207030)
chr2 (14-80)||(32118698-32118764)
chr2 (10-78)||(32156614-32156682)
chr2 (14-80)||(32174394-32174460)
chr2 (140-232)||(32110948-32111039)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 2821226 - 2820985
Alignment:
Q  10 gcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccaataagaccaatcgtttttggcaaaatatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821226 gcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccaataagaccaatcgtttttggcaaaatatt 2821127  T
Q  110 atgcccccgtgtgggctataagtctcattcttaacaacagaaccaaaattcgtcagctaaatcatccatacaattatatatatctaaactagattcatgt 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821126 atgcccccgtgtggggtataagtctcattcttaacaacagaaccaaaattcgtcagctaaatcatccatacaattatatatatctaaactagattcatgt 2821027  T
Q  210 atatcaaattattctaaatcatttctagttttatgcatacct 251  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2821026 atatcaaattattctaaatcatttctagttttatgcatacct 2820985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 32158272 - 32158421
Alignment:
Q  78 ccaataagaccaatcgtttttggcaaaatattatgcccccgtgtgggctataagtctcattcttaacaacagaaccaaaattcgtcagctaaatcatcca 177  Q
    ||||||||| ||||||||||||| ||||||||||| ||| ||| ||  |||||||| |||||||||||   |||||||||||||||| |||||||||  |    
T  32158272 ccaataagaacaatcgtttttggtaaaatattatgtcccggtgggg--tataagtcacattcttaaca---gaaccaaaattcgtcacctaaatcattaa 32158366  T
Q  178 tacaattatatatatctaaactagattcatgtatatcaaattattctaaatcatt 232  Q
    |||||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  32158367 tacaattaaatctatctaaactagattcatgtatatcaaattcttctaaatcatt 32158421  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 32212105 - 32212035
Alignment:
Q  10 gcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32212105 gcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca 32212035  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 32110431 - 32110500
Alignment:
Q  11 caaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca 80  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32110431 caaaggtagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca 32110500  T

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Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 32152541 - 32152611
Alignment:
Q  10 gcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca 80  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32152541 gcaaaggtagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaaatgaatttgcttgtcca 32152611  T

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Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 32157724 - 32157794
Alignment:
Q  10 gcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca 80  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32157724 gcaaaggtagttagtaaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca 32157794  T

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Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 32182476 - 32182546
Alignment:
Q  10 gcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca 80  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32182476 gcaaaggtagttaacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtcca 32182546  T

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Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 32207030 - 32206960
Alignment:
Q  10 gcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca 80  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32207030 gcaaaggtagttaacaaccaattgcttcaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca 32206960  T

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Target: chr2; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 32118698 - 32118764
Alignment:
Q  14 aggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca 80  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  32118698 aggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtcca 32118764  T

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Target: chr2; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 32156614 - 32156682
Alignment:
Q  10 gcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtc 78  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  32156614 gcaaaggtagttaataatcaatttcttaaaagcagaaaagttgcaatatgacaagtgaatctgcttgtc 32156682  T

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Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 32174394 - 32174460
Alignment:
Q  14 aggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca 80  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32174394 aggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtcca 32174460  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 32110948 - 32111039
Alignment:
Q  140 ttaacaacagaaccaaaattcgtcagctaaatcatccatacaattatatatatctaaactagattcatgtatatcaaattattctaaatcatt 232  Q
    ||||||| || ||||| ||||||| |||||||||| || |  |||| |||||||||| |||||||||||||| ||||||| ||| ||||||||    
T  32110948 ttaacaataggaccaacattcgtcggctaaatcatgcaaatgattaaatatatctaa-ctagattcatgtatgtcaaattcttccaaatcatt 32111039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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