View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1173_low_22 (Length: 237)
Name: NF1173_low_22
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1173_low_22 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 3373482 - 3373703
Alignment:
| Q |
16 |
tagacaattgacctgtcttaataagcatcctttgcctgttgaaacaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatattct |
115 |
Q |
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| T |
3373482 |
tagacaattgacctgtcttaataagcatcctttgcctgttgaaacaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatattct |
3373581 |
T |
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| Q |
116 |
ccactgaacattaggtttgaggctctgaagacatgaagcatagcacttgagaagtgctcataatctttctcacctttagctcgaatttcatcatgattta |
215 |
Q |
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| T |
3373582 |
ccactgaacattaggtttgaggctctgaagacatgaagcatagcacttgagaagtgctcataatctttctcaactttagctcgaatttcatcatgattta |
3373681 |
T |
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| Q |
216 |
gaaacaaacaaaaccgtactgc |
237 |
Q |
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| T |
3373682 |
gaaaccaacaaaatcgtactgc |
3373703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 237
Target Start/End: Original strand, 3347229 - 3347429
Alignment:
| Q |
37 |
taagcatcctttgcctgttgaaacaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatattctccactgaacattaggtttgag |
136 |
Q |
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|||||||||||| | ||||||||| || | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3347229 |
taagcatccttttcttgttgaaacgatcttctcaagtagcttcctagaaaaagttctagcttcctcaagttcatattctccactgaacattaggtttgag |
3347328 |
T |
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| Q |
137 |
gctctgaagacatgaagcatagcacttgagaagtgctcataatctttctcacctttagctcgaatttcatcatgatttagaaacaaacaaaaccgtactg |
236 |
Q |
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||||| || || |||||||| ||||||| ||| |||| ||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
3347329 |
gctctaaacacgtgaagcattgcacttgtgaattgcttataatctttctcaatttcagctcgaatttcatcatcatttagaaaccaacaaaaccgtactg |
3347428 |
T |
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| Q |
237 |
c |
237 |
Q |
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| T |
3347429 |
c |
3347429 |
T |
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