View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1173_low_24 (Length: 228)
Name: NF1173_low_24
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1173_low_24 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 2820781 - 2820936
Alignment:
| Q |
79 |
atgtttttgtcaaaatccattttggaagttggatgcatcaaaagatatggaattgataagtacttaccatgttcctagcttgtgtagtccggtatcttca |
178 |
Q |
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| T |
2820781 |
atgtttttgtcaaaatccattttggaagttggatgcatcaaaagatatggaattgataagtacttaccatgttcctagcttgtgtagtccagtatcttca |
2820880 |
T |
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| Q |
179 |
tacaataaggtatgta------tatgaaactatgattcatgtttgattttctctct |
228 |
Q |
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| T |
2820881 |
tacaataaggtatgtatttctctatgaaactatgattcatgtttgattttctctct |
2820936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 2815005 - 2815109
Alignment:
| Q |
79 |
atgtttttgtcaaaatccattttggaagttggatgcatcaaaag-atatggaattgataagtacttaccatgttcctagcttgtgtagtccggtatcttc |
177 |
Q |
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| T |
2815005 |
atgtttttgtcaaaatccactttg-aagttgtatgcattaaaagtatatggaattgataaatacttaccatgttcctagcttgtgttgtccagtatcttc |
2815103 |
T |
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| Q |
178 |
atacaa |
183 |
Q |
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|||||| |
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| T |
2815104 |
atacaa |
2815109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 2820616 - 2820679
Alignment:
| Q |
15 |
gtgaagtaatgttgggatcaacaagaatctagaaagagtggcaaccaataagccctttctggat |
78 |
Q |
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| T |
2820616 |
gtgaagtaatgttgggatcaacaagaatctagaaagagtggcaaccaataagccctttctggat |
2820679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 2814844 - 2814896
Alignment:
| Q |
22 |
aatgttgggatcaacaagaatctagaaagagtggcaaccaataagccctttct |
74 |
Q |
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| T |
2814844 |
aatgctgggatcaacaagaatctagaaagagtagcaaccaataatccctttct |
2814896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 1428333 - 1428235
Alignment:
| Q |
85 |
ttgtcaaaatccattttggaagttggatgcatcaaaagatatggaattgataagtacttaccatgttcctagcttgtgtagtccggtatcttcatacaa |
183 |
Q |
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|||||||||| || ||||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1428333 |
ttgtcaaaattcaatttggaagttgaatgcatcaaaatatatggaattgataaatgcttaccatgttcctagcttgtgttgtccggtatcttcatacaa |
1428235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 1428503 - 1428451
Alignment:
| Q |
22 |
aatgttgggatcaacaagaatctagaaagagtggcaaccaataagccctttct |
74 |
Q |
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| T |
1428503 |
aatgctgggatcaacaagaatctagaaagagtagcaaccaataaaccctttct |
1428451 |
T |
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