View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1173_low_3 (Length: 664)
Name: NF1173_low_3
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1173_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 399 - 651
Target Start/End: Complemental strand, 4812211 - 4811949
Alignment:
| Q |
399 |
gtcaaaaattaactcaatcaaataatactaggatggagaatt-atcactccaaagagtgctccagttacaatcctctcaatagttgtgtgcgtttattta |
497 |
Q |
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| T |
4812211 |
gtcaaaaattaactcaatcaaataatactaggatggagaatttatcactccaaagagtgctccagttacaatcctctcaatagttgtgtgcgtttattta |
4812112 |
T |
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| Q |
498 |
taatatagttgacctctacaagattcaaaagcttccaatgtgggactgctaatttttctacatatgttccacaaagca---------tccacaaagcaca |
588 |
Q |
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| T |
4812111 |
taatatagttgacctctacaagattcaaaagcttccaatgtgggactgctaatttttctacatatgttccacaaagcacgcattggttccacaaagcaca |
4812012 |
T |
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| Q |
589 |
aatggaagtattggataatacaatggtggtgctgattgcaggctgcaaagcttctttttcttc |
651 |
Q |
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| T |
4812011 |
aatggaagtattggataatacaatggtggtgctgattgcaggctgcaaagcttctttttcttc |
4811949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 4812438 - 4812292
Alignment:
| Q |
171 |
ttcttacttttcaactgcatccattgattannnnnnnnattccagataagtttcaattattgtatgataaaatcacaaatgggnnnnnnnctaatctaca |
270 |
Q |
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| T |
4812438 |
ttcttacttttcgactacatccattgattattttttt-attccagataagtttcaattattgtatgaaaaaatcacaaatgggaaaaaaactaatctaca |
4812340 |
T |
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| Q |
271 |
aaattagaattaagctagttttaattatgttttcattgaagaaccccc |
318 |
Q |
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| T |
4812339 |
aaattagaattaaactagttttaattatgttttcattgaagaaccccc |
4812292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 404 - 544
Target Start/End: Complemental strand, 4822288 - 4822150
Alignment:
| Q |
404 |
aaattaactcaatcaaataatactaggatggagaattatcactccaaagagtgctccagttacaatcctctcaatagttgtgtgcgtttatttataatat |
503 |
Q |
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| T |
4822288 |
aaattaacccaatcagataatactggg-tagaggagtatcactccaaagagtgctccagttactatccgctcaatagctgtgcgtgtttatttataatat |
4822190 |
T |
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| Q |
504 |
agttgacctctacaagattcaaaagcttccaatgtgggact |
544 |
Q |
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| T |
4822189 |
agttgacctctataaga-tcaaaagctttcgatgtgggact |
4822150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 590 - 651
Target Start/End: Complemental strand, 4821992 - 4821931
Alignment:
| Q |
590 |
atggaagtattggataatacaatggtggtgctgattgcaggctgcaaagcttctttttcttc |
651 |
Q |
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| T |
4821992 |
atggaagtattggataatacaatggtggtgctgattgcaggctgcaaagcttcattttcttc |
4821931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 475 - 575
Target Start/End: Complemental strand, 4800611 - 4800511
Alignment:
| Q |
475 |
caatagttgtgtgcgtttatttataatatagttgacctctacaagattcaaaagcttccaatgtgggactgctaatttttctacatatgttccacaaagc |
574 |
Q |
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| T |
4800611 |
caataattgtgtgggcttatttataataaagtttacctctataagtttcaaaagctttggatgtgggactatcaattgttcaacatatgtttcacaaagc |
4800512 |
T |
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| Q |
575 |
a |
575 |
Q |
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| T |
4800511 |
a |
4800511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 572
Target Start/End: Complemental strand, 4815397 - 4815316
Alignment:
| Q |
491 |
ttatttataatatagttgacctctacaagattcaaaagcttccaatgtgggactgctaatttttctacatatgttccacaaa |
572 |
Q |
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| T |
4815397 |
ttatttataatttagtttacctctatgagcttcaaaagcttccgatgtggaactaccgattgttctacatatgtttcacaaa |
4815316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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