View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1173_low_4 (Length: 499)
Name: NF1173_low_4
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1173_low_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 84 - 499
Target Start/End: Complemental strand, 39845195 - 39844795
Alignment:
| Q |
84 |
tatcataactatcctacaccttcatgaattatatacaagctgtaatgtactctatgatcaaataatgagaatcatttctattcatttcttagtttcataa |
183 |
Q |
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| T |
39845195 |
tatcataactatcctacaccttcatgaattatatacaagctgtaatgtactctatgatcaaataatgagaatcatttctattcatttcttagtttcataa |
39845096 |
T |
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| Q |
184 |
tatgatatcagctttctctctcaagtgagagaagttagttatgatccacatagggatttgtacatttatccattgcgatcttcaaagctgatcacttttc |
283 |
Q |
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| T |
39845095 |
tatggtat------------------gagagaagttatttatgatccacatagggatttgtacatttatccattgcgatcttcaaagttgatcacttttt |
39845014 |
T |
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| Q |
284 |
tt-gaagattttctcacattttcttgttgatttgattgtgactgttgatgaagctcatgctaccattgaagaattaagagtaatttactcaataatcaat |
382 |
Q |
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| T |
39845013 |
tttgaagattttctcacgttttctagttgatttgattgtgactgttgatgaagctcatgctaccattgaagaattaagagtaatttatccaataatcaat |
39844914 |
T |
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| Q |
383 |
gaaaattagtcttataagttaatttaaaaatagtacccgcaaactagtttttattcatgtggttaattt--attgatcgttggataaattgtccataatt |
480 |
Q |
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| T |
39844913 |
gaaaattagtcttataagttaatttaaaaatagtatccgcaaactaatttttattcatgtggttaattttcattgattgttggataaattgtccataatt |
39844814 |
T |
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| Q |
481 |
tttggaggtataacctatg |
499 |
Q |
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| T |
39844813 |
tttggaggtatagcctatg |
39844795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 10530547 - 10530445
Alignment:
| Q |
84 |
tatcataactatcctacaccttcatgaattatatacaagctgtaatgtactctatgatcaaataatgagaatcatttctattcatttcttagtttcataa |
183 |
Q |
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|||||||| |||| | ||||||||||| | ||| |||||| |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |
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| T |
10530547 |
tatcataaatatcatgtaccttcatgaacttcatataagctgcaatgtactctatgatcaagtaacgagaatcattttcattcatttcttagtttcataa |
10530448 |
T |
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| Q |
184 |
tat |
186 |
Q |
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||| |
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| T |
10530447 |
tat |
10530445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 6283687 - 6283590
Alignment:
| Q |
88 |
ataactatcctacaccttcatgaattatatacaagctgtaatgtactctatgatcaaataatgagaa-tcatttctattcatttcttagtttcataata |
185 |
Q |
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||||||||||||||||| ||||| |||||| ||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||||| ||||||||||| |
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| T |
6283687 |
ataactatcctacacctctatgaactatatataaggtgtattgttctcttggatcaaataatgagaatttatttc-attcatttctttgtttcataata |
6283590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 34480622 - 34480570
Alignment:
| Q |
341 |
gctaccattgaagaattaagagtaatttactcaataatcaatgaaaattagtc |
393 |
Q |
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|||||| ||||||||||| || ||||||||||| ||||||| |||||||||| |
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| T |
34480622 |
gctacctttgaagaattatgaataatttactcatcaatcaattaaaattagtc |
34480570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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