View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1173_low_5 (Length: 497)

Name: NF1173_low_5
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1173_low_5
NF1173_low_5
[»] chr1 (11 HSPs)
chr1 (30-366)||(44145602-44145938)
chr1 (34-244)||(44613460-44613670)
chr1 (34-244)||(35899837-35900044)
chr1 (34-202)||(44794668-44794836)
chr1 (34-199)||(17810834-17810999)
chr1 (34-244)||(11543609-11543819)
chr1 (275-429)||(44612834-44612983)
chr1 (430-478)||(44612764-44612812)
chr1 (443-478)||(44145567-44145602)
chr1 (275-310)||(11544222-11544257)
chr1 (275-315)||(35899529-35899569)
[»] chr5 (1 HSPs)
chr5 (34-244)||(29506700-29506910)
[»] scaffold0061 (3 HSPs)
scaffold0061 (34-244)||(28311-28521)
scaffold0061 (257-405)||(28984-29127)
scaffold0061 (431-479)||(29174-29222)
[»] scaffold0017 (4 HSPs)
scaffold0017 (34-244)||(170271-170481)
scaffold0017 (34-244)||(181358-181568)
scaffold0017 (257-405)||(169665-169808)
scaffold0017 (275-429)||(174547-174696)
[»] chr3 (5 HSPs)
chr3 (34-203)||(26729048-26729217)
chr3 (34-244)||(8343414-8343624)
chr3 (320-405)||(8342739-8342824)
chr3 (361-405)||(8342886-8342930)
chr3 (282-394)||(26728415-26728522)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 44145938 - 44145602
Alignment:
Q  30 aacagaccatgaaacatattttctccaagatccaacaaagccaactggtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttc 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44145938 aacagaccatgaaacatattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattatcatttc 44145839  T
Q  130 ttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttattgctctgatcaacaaaccttaacgcggttaa 229  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145838 ttaaaatcaaagcctccatgttagaaagggcacccattgagattggaatctttcctgacaacttgttattgctctgatcaacaaaccttaacgcggttaa 44145739  T
Q  230 attattccaacaatctgttaatacgcgggacaaccttagtattctcaatttggagaggttagtgaaatgggattcaaagacgacacgacaccttcaagag 329  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44145738 attattccaacaatcagttaatacgcgggacaaccttagtattctcaatttggagaggttagtgaaatgggattcagagacgacacgacaccttcaagag 44145639  T
Q  330 agtttcttctcaggcctaacatctgtaattccgtaag 366  Q
    |||||||||||||||| ||||||||||||||||||||    
T  44145638 agtttcttctcaggcccaacatctgtaattccgtaag 44145602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 44613670 - 44613460
Alignment:
Q  34 gaccatgaaacatattttctccaagatccaacaaagccaactggtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaa 133  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||| |||||||||||||    
T  44613670 gaccatgaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaaagaggaaggaagttgtccactcaaactattatttcttaa 44613571  T
Q  134 aatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttattgctctgatcaacaaaccttaacgcggttaaatta 233  Q
    ||||||||||||||  || | ||||| ||||||||||| ||||||||||||  | || |||||||| ||    ||||||||  |||||| ||||| ||||    
T  44613570 aatcaaagcctccatatttgtaagggtacccattgagaatggaatctttccccataatttgttatttcttaagtcaacaaattttaacgaggttagatta 44613471  T
Q  234 ttccaacaatc 244  Q
    |||||||||||    
T  44613470 ttccaacaatc 44613460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 35900044 - 35899837
Alignment:
Q  34 gaccatgaaacatattttctccaagatccaacaaagccaactggtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaa 133  Q
    |||||||||| |||||||||||||||||||| ||||||||   ||||||||||||||| ||||| |||||||||||||| | ||||||||||||| ||||    
T  35900044 gaccatgaaatatattttctccaagatccaataaagccaa---gtttgagcaattctttaatgaggaaggaagttgtccccccaaattattatttgttaa 35899948  T
Q  134 aatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttattgctctgatcaacaaaccttaacgcggttaaatta 233  Q
    | ||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||||||| ||| | |||| | |   ||| | || |||||||    
T  35899947 actcaaagcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttatttctcaggtcaatatattgtaatgaggataaatta 35899848  T
Q  234 ttccaacaatc 244  Q
    |||||||||||    
T  35899847 ttccaacaatc 35899837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 44794668 - 44794836
Alignment:
Q  34 gaccatgaaacatattttctccaagatccaacaaagccaactggtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaa 133  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||    
T  44794668 gaccatgaaacttattttctccaagatccaacaaagccaacttgtttgagaaattcttcaaagaggaaggaagttgtccactcaaactattatttcttaa 44794767  T
Q  134 aatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttattgct 202  Q
    || ||||   |||| | ||| ||||| ||||||||||| |||||||||||||| |||||| ||||||||    
T  44794768 aaccaaattgtccatgctagcaagggaacccattgagaatggaatctttcctgtcaacttattattgct 44794836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 34 - 199
Target Start/End: Original strand, 17810834 - 17810999
Alignment:
Q  34 gaccatgaaacatattttctccaagatccaacaaagccaactggtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaa 133  Q
    ||||||||||| |||||||||| || ||||||||||||| || ||  ||||| ||||||||||| |||| ||||||||||||||||  ||||||||||||    
T  17810834 gaccatgaaacttattttctccgaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccattatttcttaa 17810933  T
Q  134 aatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttatt 199  Q
    |||||||||||||| ||||  |||||||||||||||||  ||||||||||||||||||||||||||    
T  17810934 aatcaaagcctccatgttaacaagggcacccattgagaagggaatctttcctgacaacttgttatt 17810999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 11543609 - 11543819
Alignment:
Q  34 gaccatgaaacatattttctccaagatccaacaaagccaactggtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaa 133  Q
    ||||||||||| ||||||||||||| ||||| | |||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  11543609 gaccatgaaacgtattttctccaaggtccaagatagccaacttgtctgagcaattcttcaatgaagaaggaagttgtccactcaaactattatttcttag 11543708  T
Q  134 aatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttattgctctgatcaacaaaccttaacgcggttaaatta 233  Q
    || |||| | | || ||||  |||||||||||| || | ||| |||||||| |||||||||||||| ||  | |||||| |   || || ||||||||||    
T  11543709 aaccaaatcttgcatgttaacaagggcacccatcgacaatgggatctttcccgacaacttgttattactgaggtcaacatagtatagcgaggttaaatta 11543808  T
Q  234 ttccaacaatc 244  Q
    |||||||||||    
T  11543809 ttccaacaatc 11543819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 429
Target Start/End: Complemental strand, 44612983 - 44612834
Alignment:
Q  275 caatttggagaggttagtgaaatgggattcaaagacgacacgacaccttcaagagagtttcttctcaggcctaacatctgtaattccgtaagcgatccga 374  Q
    ||||||||||||||||||||||||||||||| ||| || ||     |||||| ||||||||  | ||||   ||   |||||| || ||||| |||||||    
T  44612983 caatttggagaggttagtgaaatgggattcagagatgatac-----cttcaaaagagtttccgcccaggtacaaatactgtaactcggtaagtgatccga 44612889  T
Q  375 tgctcgtgggtatttctccaatcaatttattattaccaagaaccaacagtctcaa 429  Q
    |||||| ||||||||||||| | ||||||||   |  ||||||||||||||||||    
T  44612888 tgctcgcgggtatttctccagttaatttattgacattaagaaccaacagtctcaa 44612834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 478
Target Start/End: Complemental strand, 44612812 - 44612764
Alignment:
Q  430 tggtaacttgcccgaaatctcattattccataataatagttcctgtaac 478  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||    
T  44612812 tggtaacttgcccgaaatctcattattccatagccatagttcctgtaac 44612764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 478
Target Start/End: Complemental strand, 44145602 - 44145567
Alignment:
Q  443 gaaatctcattattccataataatagttcctgtaac 478  Q
    ||||||||||||||||||||||||||||||||||||    
T  44145602 gaaatctcattattccataataatagttcctgtaac 44145567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 310
Target Start/End: Original strand, 11544222 - 11544257
Alignment:
Q  275 caatttggagaggttagtgaaatgggattcaaagac 310  Q
    ||||||||||||||||||||||||||||||| ||||    
T  11544222 caatttggagaggttagtgaaatgggattcagagac 11544257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 35899569 - 35899529
Alignment:
Q  275 caatttggagaggttagtgaaatgggattcaaagacgacac 315  Q
    |||||||||||||||||||||||| |||||| ||| |||||    
T  35899569 caatttggagaggttagtgaaatgagattcagagatgacac 35899529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 29506700 - 29506910
Alignment:
Q  34 gaccatgaaacatattttctccaagatccaacaaagccaactggtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaa 133  Q
    ||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||| || ||||||| ||||||||||||| | |||||||||||    
T  29506700 gaccatgaaacatattttctccaaggtccaacaaagccaatttgtttgaacaattcttcaaggaggaaggaaattgtccactcaaactgttatttcttaa 29506799  T
Q  134 aatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttattgctctgatcaacaaaccttaacgcggttaaatta 233  Q
    ||||||||||||||  |||  ||| ||||||||||||| ||||||||| || ||||| |||||||||||| | |||||||||  ||| | ||||| ||||    
T  29506800 aatcaaagcctccatattaacaagagcacccattgagaatggaatcttacccgacaagttgttattgctcagttcaacaaactgtaatgaggttagatta 29506899  T
Q  234 ttccaacaatc 244  Q
    |||||||||||    
T  29506900 ttccaacaatc 29506910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 28311 - 28521
Alignment:
Q  34 gaccatgaaacatattttctccaagatccaacaaagccaactggtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaa 133  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| || ||||||||||| ||||||||| |||||||||||||    
T  28311 gaccttgaaacatattttctccaagatccaacatagccaacttgtttgagaaattcttcaaagaggaaggaagttggccactcaaactattatttcttaa 28410  T
Q  134 aatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttattgctctgatcaacaaaccttaacgcggttaaatta 233  Q
    || ||||||||||| ||||  |||||||||||||||||| ||||| |||||  | || |||||||||||  | ||||||||  |||| | ||||| ||||    
T  28411 aaccaaagcctccatgttaacaagggcacccattgagatgggaatttttccccataatttgttattgctgaggtcaacaaattttaatgaggttagatta 28510  T
Q  234 ttccaacaatc 244  Q
    |||||||||||    
T  28511 ttccaacaatc 28521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 405
Target Start/End: Original strand, 28984 - 29127
Alignment:
Q  257 ggacaaccttagtattctcaatttggagaggttagtgaaatgggattcaaagacgacacgacaccttcaagagagtttcttctcaggcctaacatctgta 356  Q
    |||||||| |||  || |||||||||||||||||||||||||||||||| |||||||||     |||||| ||||||||  ||||||   ||  ||| ||    
T  28984 ggacaaccatagccttttcaatttggagaggttagtgaaatgggattcagagacgacac-----cttcaaaagagtttcggctcaggtacaaactcttta 29078  T
Q  357 attccgtaagcgatccgatgctcgtgggtatttctccaatcaatttatt 405  Q
    | || ||||| ||||||||||||||||||||||||||||| ||||||||    
T  29079 actctgtaagtgatccgatgctcgtgggtatttctccaattaatttatt 29127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 479
Target Start/End: Original strand, 29174 - 29222
Alignment:
Q  431 ggtaacttgcccgaaatctcattattccataataatagttcctgtaaca 479  Q
    |||||| |||| ||||||||||||||| ||||  |||||||||||||||    
T  29174 ggtaacatgcctgaaatctcattattcgataaccatagttcctgtaaca 29222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 170481 - 170271
Alignment:
Q  34 gaccatgaaacatattttctccaagatccaacaaagccaactggtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaa 133  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| || ||||||||||| ||||||||| |||||||||||||    
T  170481 gaccttgaaacatattttctccaagatccaacatagccaacttgtttgagaaattcttcaaagaggaaggaagttggccactcaaactattatttcttaa 170382  T
Q  134 aatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttattgctctgatcaacaaaccttaacgcggttaaatta 233  Q
    || ||||||||||| ||||  |||||||||||||||||| ||||| |||||  | || |||||||||||  | ||||||||  |||| | ||||| ||||    
T  170381 aaccaaagcctccatgttaacaagggcacccattgagatgggaatttttccccataatttgttattgctgaggtcaacaaattttaatgaggttagatta 170282  T
Q  234 ttccaacaatc 244  Q
    |||||||||||    
T  170281 ttccaacaatc 170271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 181568 - 181358
Alignment:
Q  34 gaccatgaaacatattttctccaagatccaacaaagccaactggtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaa 133  Q
    ||||||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||  | ||||||||||| ||||||| | |||||||||||||    
T  181568 gaccatgaaacttattttctccaagatccaacagagccaacttgttttagcaattcttcaaacaggaaggaagttgaccactcatactattatttcttaa 181469  T
Q  134 aatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttattgctctgatcaacaaaccttaacgcggttaaatta 233  Q
    || |||| ||||||  || | ||||| |||||||||||  ||||||||||| |||||||||||||||||| |||||||| |   ||| | |||||||| |    
T  181468 aaccaaaacctccatatttgtaagggtacccattgagaagggaatctttccggacaacttgttattgctcagatcaacatattgtaatgaggttaaatca 181369  T
Q  234 ttccaacaatc 244  Q
    |||||||||||    
T  181368 ttccaacaatc 181358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 405
Target Start/End: Complemental strand, 169808 - 169665
Alignment:
Q  257 ggacaaccttagtattctcaatttggagaggttagtgaaatgggattcaaagacgacacgacaccttcaagagagtttcttctcaggcctaacatctgta 356  Q
    |||||||| |||  || |||||||||||||||||||||||||||||||| |||||||||     |||||| ||||||||  ||||||   ||  ||| ||    
T  169808 ggacaaccatagccttttcaatttggagaggttagtgaaatgggattcagagacgacac-----cttcaaaagagtttcggctcaggtacaaactcttta 169714  T
Q  357 attccgtaagcgatccgatgctcgtgggtatttctccaatcaatttatt 405  Q
    | || ||||| ||||||||||||||||||||||||||||| ||||||||    
T  169713 actctgtaagtgatccgatgctcgtgggtatttctccaattaatttatt 169665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 429
Target Start/End: Complemental strand, 174696 - 174547
Alignment:
Q  275 caatttggagaggttagtgaaatgggattcaaagacgacacgacaccttcaagagagtttcttctcaggcctaacatctgtaattccgtaagcgatccga 374  Q
    |||||||||||||||||||||||| ||||||     || || |||||||||| ||||||||| ||||| |  ||  ||||||| ||| | ||||||||||    
T  174696 caatttggagaggttagtgaaatgcgattca-----gagacaacaccttcaaaagagtttctgctcagactcaatgtctgtaactccatgagcgatccga 174602  T
Q  375 tgctcgtgggtatttctccaatcaatttattattaccaagaaccaacagtctcaa 429  Q
    |||| ||| ||||||||||||| |||||||||| | |||||  |||| |||||||    
T  174601 tgctagtgtgtatttctccaattaatttattatcagcaagatacaactgtctcaa 174547  T

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Target: chr3 (Bit Score: 106; Significance: 8e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 26729217 - 26729048
Alignment:
Q  34 gaccatgaaacatattttctccaagatccaacaaagccaactggtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaa 133  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |||| |||||||||||||||| |||||||||||||    
T  26729217 gaccatgaaacatattttctccaaggtccaacaaagccaacttgtttgaacaattcttcaatgaggaagtaagttgtccactcaaactattatttcttaa 26729118  T
Q  134 aatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttattgctc 203  Q
    |||||||||||| | ||||  ||| ||||||||||||  |||||| |||||  |||||||||||||||||    
T  26729117 aatcaaagcctctatgttaacaagagcacccattgaggatggaatatttccccacaacttgttattgctc 26729048  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 8343624 - 8343414
Alignment:
Q  34 gaccatgaaacatattttctccaagatccaacaaagccaactggtttgagcaattcttcaatgaagaaggaagttgtccactcaaattattatttcttaa 133  Q
    ||||||||||| ||||||||||||  |||||||||| |||||  ||||||||||| ||||| || ||||||||||||||||||||| ||||| |||||||    
T  8343624 gaccatgaaacttattttctccaatttccaacaaagtcaacttttttgagcaatttttcaaggaggaaggaagttgtccactcaaactattacttcttaa 8343525  T
Q  134 aatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttattgctctgatcaacaaaccttaacgcggttaaatta 233  Q
    ||| ||||| || |  || | || |  ||||||||||| |||||||||||| |||||||||||||| ||  | |||| | |   ||| | ||||||||||    
T  8343524 aattaaagcttcgatatttggaacgttacccattgagaatggaatctttcccgacaacttgttattactaaggtcaagatagtataatgaggttaaatta 8343425  T
Q  234 ttccaacaatc 244  Q
    |||||||||||    
T  8343424 ttccaacaatc 8343414  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 8342824 - 8342739
Alignment:
Q  320 ccttcaagagagtttcttctcaggcctaacatctgtaattccgtaagcgatccgatgctcgtgggtatttctccaatcaatttatt 405  Q
    ||||||| ||||||||| | |||||  || | || ||| || |||||||| |||||||||||||||||||||||||| ||||||||    
T  8342824 ccttcaaaagagtttctgcgcaggctcaaaacctctaactctgtaagcgacccgatgctcgtgggtatttctccaattaatttatt 8342739  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 8342930 - 8342886
Alignment:
Q  361 cgtaagcgatccgatgctcgtgggtatttctccaatcaatttatt 405  Q
    |||||| ||||||||||||||||||||||||||||| | ||||||    
T  8342930 cgtaagtgatccgatgctcgtgggtatttctccaattagtttatt 8342886  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 394
Target Start/End: Complemental strand, 26728522 - 26728415
Alignment:
Q  282 gagaggttagtgaaatgggattcaaagacgacacgacaccttcaagagagtttcttctcaggcctaacatctgtaattccgtaagcgatccgatgctcgt 381  Q
    ||||||||||||||||||||||||     || ||||||||||||| |||||||  || |||| | || |||| ||| |||||||| ||||| ||||| |     
T  26728522 gagaggttagtgaaatgggattca-----gagacgacaccttcaaaagagtttactcccaggtccaaaatctctaaatccgtaagtgatcccatgcttgc 26728428  T
Q  382 gggtatttctcca 394  Q
     ||||||||||||    
T  26728427 aggtatttctcca 26728415  T

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