View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1173_low_6 (Length: 408)
Name: NF1173_low_6
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1173_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 78 - 402
Target Start/End: Original strand, 18327346 - 18327675
Alignment:
| Q |
78 |
tagttatatttatttttcagatttttctttacacgtcttataattttatctcatgtataatgtaagaaatatat--------cttttaaccatgtgaata |
169 |
Q |
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| T |
18327346 |
tagttatatttatttttcagatttttctttacacgtcttataattttatctcatgtataatgtaagaaatagatatttaaatcttttaaccatg--aata |
18327443 |
T |
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| Q |
170 |
tcatatgatcgatctttgatcgatgcatattaaaa-aattatcacaagaatcaaacttcttaaataaatttcagttacatagtgaaaattaattttaaaa |
268 |
Q |
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| T |
18327444 |
tcatacgatcgat--ttgatcgatgcatattaaaaaaattatcacaagaatcaaacttcttaaataaatttcaattacatagtgaaaattagtcttaaaa |
18327541 |
T |
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| Q |
269 |
attacacgcgatcaaaaatcatctcatgtatggatcgttttctcaagattggatagcaacaaaagagacacaaaacaacttgagcaactaaaattcatgt |
368 |
Q |
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| T |
18327542 |
attacacgcgatcaaaaattatctcatgtatggatcgttttctcaaggttggatagcaacaaaagagacacaaaacaacttgagcaactaaaattcatgt |
18327641 |
T |
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| Q |
369 |
cataataggaatgtctatgtctcagaattatcta |
402 |
Q |
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| T |
18327642 |
cataataggaatgtctatgtctcagaattatcta |
18327675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 18327116 - 18327172
Alignment:
| Q |
30 |
gaaagttcaatccatgtagcttagatatttacaatccttcaaatttcatagttatat |
86 |
Q |
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| T |
18327116 |
gaaagttcaatccatgtagcttagatatttacaatccttcaaatttcatagttatat |
18327172 |
T |
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