View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1173_low_7 (Length: 383)
Name: NF1173_low_7
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1173_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 379
Target Start/End: Original strand, 39624222 - 39624565
Alignment:
| Q |
29 |
acacatgaatgattagtaggataaaaaatggtcttttggcaccaaatcgcttaaaatccggttaggctaagttgccaatctcaaatgcattttgcac-aa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39624222 |
acacatgaatgattagtaggataaaaaatggtcttttggcaccaaatcgcttaaaatccggttaggctaagttgccaatctcaaatgcattttgcacaaa |
39624321 |
T |
|
| Q |
128 |
gtgtgctagattaataacttaacataaatgaaacctataaaacaaaaaacatgtcaaaaggtaatccatgcataaattattagatgtgaataatccatcc |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39624322 |
gtgtgctagattaataacttaacataaatgaaacctataaaacaaaaaacatgtcaaaaggtaatccatgcataaattattagatgtgaata----atcc |
39624417 |
T |
|
| Q |
228 |
aactctgtattggcatgtggtttagcaacnnnnnnnnnnnnnntcattttgaaaatcagaagcaagctttattttcattattaatgcttttaacttacaa |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39624418 |
aactctgtattggcatgtggtttagcaac----aaaaaaaaaatcattttgaaaatcagaagcaagctttattttcattattaatgcttttaacttacaa |
39624513 |
T |
|
| Q |
328 |
gttagaattgattacatggtgtttgagtttgacgattgtagtattatctacc |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
39624514 |
gttagaattgattacatggtgtttgagtttgacgattgtagtgttatttacc |
39624565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 379
Target Start/End: Original strand, 39633772 - 39634115
Alignment:
| Q |
29 |
acacatgaatgattagtaggataaaaaatggtcttttggcaccaaatcgcttaaaatccggttaggctaagttgccaatctcaaatgcattttgcac-aa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39633772 |
acacatgaatgattagtaggataaaaaatggtcttttggcaccaaatcgcttaaaatccggttaggctaagttgccaatctcaaatgcattttgcacaaa |
39633871 |
T |
|
| Q |
128 |
gtgtgctagattaataacttaacataaatgaaacctataaaacaaaaaacatgtcaaaaggtaatccatgcataaattattagatgtgaataatccatcc |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39633872 |
gtgtgctagattaataacttaacataaatgaaacctataaaacaaaaaacatgtcaaaaggtaatccatgcataaattattagatgtgaata----atcc |
39633967 |
T |
|
| Q |
228 |
aactctgtattggcatgtggtttagcaacnnnnnnnnnnnnnntcattttgaaaatcagaagcaagctttattttcattattaatgcttttaacttacaa |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39633968 |
aactctgtattggcatgtggtttagcaac----aaaaaaaaaatcattttgaaaatcagaagcaagctttattttcattattaatgcttttaacttacaa |
39634063 |
T |
|
| Q |
328 |
gttagaattgattacatggtgtttgagtttgacgattgtagtattatctacc |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
39634064 |
gttagaattgattacatggtgtttgagtttgacgattgtagtgttatttacc |
39634115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University