View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1173_low_9 (Length: 350)
Name: NF1173_low_9
Description: NF1173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1173_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 2759522 - 2759214
Alignment:
| Q |
11 |
attattctcatcacaaaaatggcagtgtctttatccaaaaaacggtccaaattttcaagaaaattagaacccaaacaatcttgttttgccttcacaattc |
110 |
Q |
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| T |
2759522 |
attattctcatcacaataatggcagtgtctttatccaaaaaacggtccaaattttcaagaaaattagaacccaaacaatcttgttttgccttcacaattc |
2759423 |
T |
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| Q |
111 |
tatacagcttcatacgtagaatttctgctttaatctttcttttaatccttatatacatgtggtcttctttctccacaattataacaggaaacatcattca |
210 |
Q |
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| T |
2759422 |
tatacagcttcatacgtagaatttctgctttaatctttcttttaatccttatatacatttggtcttctttctccacaattataacaggaaacatcattca |
2759323 |
T |
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| Q |
211 |
tgtttgtttttctacaagaaagctcaatgataacttctattgtgtttctgcagccactcatactaatccttcctttgatatcccaacttattccataaac |
310 |
Q |
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| T |
2759322 |
tgtttgtttttctacaagaaagctcaatgataacttctattgtgtttctgcagccactcatactaatccttcctttgatatcccaacttattccataaac |
2759223 |
T |
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| Q |
311 |
aataatact |
319 |
Q |
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||||||||| |
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| T |
2759222 |
aataatact |
2759214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 126 - 322
Target Start/End: Complemental strand, 2755446 - 2755250
Alignment:
| Q |
126 |
gtagaatttctgctttaatctttcttttaatccttatatacatgtggtcttctttctccacaattataacaggaaacatcattcatgtttgtttttctac |
225 |
Q |
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|||||||||| |||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||||||| |||| |||||||||||||| |||||| |
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| T |
2755446 |
gtagaatttcggctttaatctttcttttattcctaatctacatgtggtcttctttatccactattataacagtcaacaccattcatgtttgttgttctac |
2755347 |
T |
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| Q |
226 |
aagaaagctcaatgataacttctattgtgtttctgcagccactcatactaatccttcctttgatatcccaacttattccataaacaataatactatt |
322 |
Q |
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| T |
2755346 |
aagaaagttcagtaatagcttttattgtctttcttcacccactcatactaatacttcctttgaaatctcaaattattccataaacaataatactatt |
2755250 |
T |
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