View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_high_10 (Length: 435)
Name: NF11740_high_10
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 18787212 - 18787645
Alignment:
| Q |
1 |
tggtgtaaaccttcccgaaaaggtaaaattctgttggttaattactaaacgaatttctgatcaagaaaatttgttagctaacgacaaaatcgattaggat |
100 |
Q |
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| T |
18787212 |
tggtgtaaaccttcccgaaaaggtaaaattttgttggttaata--taaacgaatttctgatcaagaaaatttgttagctaacgacaaaatcgattaggat |
18787309 |
T |
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| Q |
101 |
ggataaagggaaggatataagaaatgtgacttatattacctaatactacgagggtttaggttgcaatatgctatcttggtctcttgtggtcttggtcatt |
200 |
Q |
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| T |
18787310 |
ggacaaaaggaaggttataagaaatgtgacttatattacctaatactacgagggtttaggttgcgatatgctatcttggtctcttgtggtcttggtcatt |
18787409 |
T |
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| Q |
201 |
ttagtaaca--ctcgatacttcctgaagaccattccatttgttttgcagactatctttgaaaatgacataaatgagacggtactttggcatgatcaaagt |
298 |
Q |
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| T |
18787410 |
atcgtaacactctcgatacttcctgaagacaattccatttgttttgcagactatctttgaaaatgacataaatgagacggtactttggcatgatcaaagt |
18787509 |
T |
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| Q |
299 |
cagcaatataatcgttttgggaggtacggcttattaattcgctatctttccc-------------attgttatgcaataatccaaaatagacagtttaca |
385 |
Q |
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| T |
18787510 |
cagcaatatagttgttttgggaggtacggcttattaattcactatctttcccatttactctgtggattgttatgtaataatccaaaatagacagtttaca |
18787609 |
T |
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| Q |
386 |
atcggttttatggggcagccgactgcagactgtatt |
421 |
Q |
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| T |
18787610 |
gtcggttttatggggcagccgactgcagactgtatt |
18787645 |
T |
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