View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11740_high_13 (Length: 419)
Name: NF11740_high_13
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_high_13 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 116 - 252
Target Start/End: Complemental strand, 2810079 - 2809943
Alignment:
| Q |
116 |
tactagaatatctcttaatttaaaagccttggtcctgtaaccttaacactttggatatttactattagcacaaattactctattaagcaacgtaacgtag |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2810079 |
tactataatatctcttaatttaaaagccttggtcttgtaaccttaacactttggatatttactattagcacaaattactctattaagcaacgtaacgtag |
2809980 |
T |
|
| Q |
216 |
catatatgtgtaacaaacaatcttgatataacctcaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2809979 |
catatatgtgtaacaaacaatcttgatataacctcaa |
2809943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 248 - 407
Target Start/End: Complemental strand, 2809915 - 2809752
Alignment:
| Q |
248 |
ctcaagcatgggtaaaaatgaatgttttccaattttagagtaaaaacataaagcaaatttatctttctttatctttatgtaccattctttgcaaataata |
347 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2809915 |
ctcatgcatgggtacaaatgcatgttttccatttttagagtaaaaacataaagcaaatttatctttctttatctttatgtaccattctttgcaaataata |
2809816 |
T |
|
| Q |
348 |
gtcacaacttccacaatatagtaaattaaatcataatta----cgagcaaataataatcattct |
407 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2809815 |
gtcacagcttccacaatatagtaaattaaatcataattacgatcgagcaaataataatcattct |
2809752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 24495352 - 24495180
Alignment:
| Q |
1 |
tatatagaaacatatttgttgtcctaataattgcttcctacaactatggtttgactttctctaatcaattacagtgtgatatt--------atcacagaa |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24495352 |
tatatagaaacatatttgttgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagat |
24495253 |
T |
|
| Q |
93 |
taactctcatcttaaatgcttaatacta-gaatatctcttaatttaaaagccttggtcctgtaaccttaacac |
164 |
Q |
| |
|
||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495252 |
taactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaacac |
24495180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 24491794 - 24491623
Alignment:
| Q |
1 |
tatatagaaacatatttgttgtcctaataattgcttcctacaactatggtttgactttctctaatcaattacagtgtgatatt--------atcacagaa |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24491794 |
tatatagaaacatatttgttgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagat |
24491695 |
T |
|
| Q |
93 |
taactctcatcttaaatgcttaatacta-gaatatctcttaatttaaaagccttggtcctgtaaccttaaca |
163 |
Q |
| |
|
||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24491694 |
taactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaaca |
24491623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 2810350 - 2810224
Alignment:
| Q |
1 |
tatatagaaacatatttgttgtcctaataattgcttcctacaactatggtttgactttctctaatcaattacagtgtgatatt--------atcacagaa |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2810350 |
tatatagaaacatatttgttgtcctaataattgcttcctagagctatggtttgactttctctaatcaattacagtgtgatattatttcttaatcacagaa |
2810251 |
T |
|
| Q |
93 |
taactctcatcttaaatgcttaatact |
119 |
Q |
| |
|
|||||||| ||| |||||||||||||| |
|
|
| T |
2810250 |
taactctcgtctaaaatgcttaatact |
2810224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 18556641 - 18556812
Alignment:
| Q |
1 |
tatatagaaacatatttgttgtcctaataattgcttcctacaactatggtttgactttctctaatcaattacagtgtgatattat--------cacagaa |
92 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
18556641 |
tatatagaaacatatttgctgtcctaataattgcttcctccagctatggtttgactttctctagtcaattatagtgtgatattatttcttgatcacagaa |
18556740 |
T |
|
| Q |
93 |
taactctcatcttaaatgcttaatactagaatatctcttaatttaaaagccttggtcctgtaaccttaacac |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18556741 |
taactctcatcttaaatgcttaatactagaatatctcttaatttaaaagccttggtcctgtaaccttaacac |
18556812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 24359107 - 24358936
Alignment:
| Q |
1 |
tatatagaaacatatttgttgtcctaataattgcttcctacaactatggtttgactttctctaatcaattacagtgtgatatt--------atcacagaa |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24359107 |
tatatagaaacatatttgttgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagat |
24359008 |
T |
|
| Q |
93 |
taactctcatcttaaatgcttaatacta-gaatatctcttaatttaaaagccttggtcctgtaaccttaaca |
163 |
Q |
| |
|
||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24359007 |
taactctcatcttaaatgcttaataatactagtatctcttaatttaaaagccttggtcctgtaaccttaaca |
24358936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 86853 - 86693
Alignment:
| Q |
1 |
tatatagaaacatatttgttgtcctaataattgcttcctacaactatggtttgactttctctaatcaattacagtgtgatatt--------atcacagaa |
92 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
86853 |
tatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaa |
86754 |
T |
|
| Q |
93 |
taactctcatcttaaatgcttaatactag-----aatatctcttaatttaaaagccttggt |
148 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
86753 |
taactctcatcttaaatgcttaatactagaatataatatcacttaatttaaaagccttggt |
86693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 86677 - 86645
Alignment:
| Q |
132 |
aatttaaaagccttggtcctgtaaccttaacac |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
86677 |
aatttaaaagccttggtcctgtaaccttaacac |
86645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University