View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11740_high_15 (Length: 413)
Name: NF11740_high_15
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Complemental strand, 37823569 - 37823192
Alignment:
| Q |
17 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823569 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
37823470 |
T |
|
| Q |
117 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823469 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
37823370 |
T |
|
| Q |
217 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823369 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
37823270 |
T |
|
| Q |
317 |
tcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgt |
394 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
37823269 |
tcaaggaatgatgaatgtgagtgacgaccaaattggtttgcaatacatgggtgactcttattactacaatgattctgt |
37823192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 37401493 - 37401870
Alignment:
| Q |
17 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401493 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
37401592 |
T |
|
| Q |
117 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401593 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
37401692 |
T |
|
| Q |
217 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401693 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
37401792 |
T |
|
| Q |
317 |
tcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgt |
394 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
37401793 |
tcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgggtgactcttattactacaatgattctgt |
37401870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Complemental strand, 37639411 - 37639034
Alignment:
| Q |
17 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639411 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
37639312 |
T |
|
| Q |
117 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639311 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
37639212 |
T |
|
| Q |
217 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639211 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
37639112 |
T |
|
| Q |
317 |
tcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgt |
394 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
37639111 |
tcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgggtgactcttattactacaatgattctgt |
37639034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 37711169 - 37710823
Alignment:
| Q |
17 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37711169 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggatcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
37711070 |
T |
|
| Q |
117 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37711069 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
37710970 |
T |
|
| Q |
217 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37710969 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccagcatcatgcatcaagaactt |
37710870 |
T |
|
| Q |
317 |
tcaaggaatgatgaatgtgaatgacagccaaattggtttgcaataca |
363 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| | ||||||||| |
|
|
| T |
37710869 |
tcaaggaatgatgaaggtgaatgacaaaaaaattgatctgcaataca |
37710823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 37593866 - 37593492
Alignment:
| Q |
20 |
aaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggaccttggt |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||| |||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
37593866 |
aaatgcatttcagactataaagttgaatggaaaccaattggaaggaccattaccacagtctttgtctcactgttcatttcttgaagttttggaccttggt |
37593767 |
T |
|
| Q |
120 |
gacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacct |
219 |
Q |
| |
|
||||||||| | ||||| |||||||| |||||||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
37593766 |
gacaacaacatagaggacacatttccaaattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcactt |
37593667 |
T |
|
| Q |
220 |
gttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttca |
319 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593666 |
gttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttca |
37593567 |
T |
|
| Q |
320 |
aggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593566 |
aggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgt |
37593492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 37696257 - 37695883
Alignment:
| Q |
20 |
aaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggaccttggt |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||| |||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
37696257 |
aaatgcatttcagactataaagttgaatggaaaccaattggaaggaccattaccacagtctttgtctcactgttcatttcttgaagttttggaccttggt |
37696158 |
T |
|
| Q |
120 |
gacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacct |
219 |
Q |
| |
|
||||||||| | ||||| |||||||| |||||||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
37696157 |
gacaacaacatagaggacacatttccaaattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcactt |
37696058 |
T |
|
| Q |
220 |
gttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttca |
319 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37696057 |
gttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttca |
37695958 |
T |
|
| Q |
320 |
aggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37695957 |
aggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgacggttattactataatgattctgt |
37695883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 395
Target Start/End: Complemental strand, 37532762 - 37532387
Alignment:
| Q |
20 |
aaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggaccttggt |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| || |||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
37532762 |
aaatgcatttcagactataaagttgaatggaaaccaattggaaggaccattaccccagtctttgtctcactgttcatttcttgaagttttggaccttggt |
37532663 |
T |
|
| Q |
120 |
gacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacct |
219 |
Q |
| |
|
||||||||| | ||||| |||||||| |||||||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
37532662 |
gacaacaacatagaggacacatttccaaattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcactt |
37532563 |
T |
|
| Q |
220 |
gttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttca |
319 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
37532562 |
gttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctaacaacaattttagtgggcccttgccaatatcatgcatcaagaactttaa |
37532463 |
T |
|
| Q |
320 |
aggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgtg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37532462 |
aggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgcgggttattactataatgattctgtg |
37532387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 37702348 - 37702023
Alignment:
| Q |
17 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| | |||||| |||||||||| ||||||||| |
|
|
| T |
37702348 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccgcagtctttggctcaatgttcaaatcttgaagtattggacctt |
37702249 |
T |
|
| Q |
117 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
216 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |
|
|
| T |
37702248 |
ggtgacaacaacatagaggatacatttcccaattggctagaaactttaccagagttacaggtgctgagtttacgatcaaatcatcttcatggtgcaatca |
37702149 |
T |
|
| Q |
217 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
316 |
Q |
| |
|
| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37702148 |
cttgttctagcaccaagcattcatttcctaagttgagaatttttgatgcctctaacaacaattttagtggccccttgccaacatcatgcatcaagaactt |
37702049 |
T |
|
| Q |
317 |
tcaaggaatgatgaatgtgaatgaca |
342 |
Q |
| |
|
|||||||||||| ||||| ||||||| |
|
|
| T |
37702048 |
tcaaggaatgattaatgtaaatgaca |
37702023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 37393372 - 37393723
Alignment:
| Q |
17 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
116 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
37393372 |
aggaaatatatttgagactataaaattgaatggaaaccaattggaaggaccattaccacaatgtttggcttactgttcatatcttgaagtattggacctt |
37393471 |
T |
|
| Q |
117 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
216 |
Q |
| |
|
|||||||||||| | |||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
37393472 |
ggtgacaacaacatagaggatacttttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaatcatcttcatgggtcaatca |
37393571 |
T |
|
| Q |
217 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
316 |
Q |
| |
|
| |||||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
37393572 |
catgttctagcaccaagcatccatttcctaagttgagaatttatgatgtctctagtaacaattttagtggccccttgccaacatcatgcttcaagaactt |
37393671 |
T |
|
| Q |
317 |
tcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggt |
368 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
37393672 |
tcaaggaatgatggatgtgaataacagccaaattggtttgcaatacatgggt |
37393723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 37382821 - 37383199
Alignment:
| Q |
17 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| |||||||||| |||||||||| ||||||||| ||||| || | || ||||||||||||||| |
|
|
| T |
37382821 |
aggaaatgcatttgagacaataaagttgaatggaaaccgattggaaggaccattaccacagtctttggctcactgtacaaaactcgaagttttggacctt |
37382920 |
T |
|
| Q |
117 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
216 |
Q |
| |
|
|| ||||||||||| |||||||| ||||| ||||||| |||||||||| ||| ||||||||| | |||||| |||||||||| |||||||| ||||||| |
|
|
| T |
37382921 |
ggagacaacaacgtagaggatacttttcccaattggcttgaaactctacaagaattacaggtgctcagtttaagatcaaataaacttcatggcgcaatca |
37383020 |
T |
|
| Q |
217 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
316 |
Q |
| |
|
| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| || |
|
|
| T |
37383021 |
catgctctagcaccaaacatccatttcccaagttgagaatttttgatgtctctaacaacaattttattgggcccttgccaacatcgtgcatcaagaattt |
37383120 |
T |
|
| Q |
317 |
tcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgtg |
395 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||||||||| |||| | |||||||||||||||||||| |
|
|
| T |
37383121 |
tcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgggtaagtccaattactataatgattctgtg |
37383199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 37435375 - 37434997
Alignment:
| Q |
17 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
116 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| ||||| || | || || ||||||||||| |
|
|
| T |
37435375 |
aggaaatgccttcgagactataaagttgaatggcaaccaattagaaggaccattacctcaatctttggctcactgtacagaactcaaaattttggacctt |
37435276 |
T |
|
| Q |
117 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
216 |
Q |
| |
|
|| |||||||| | |||||||||||||| |||||||||||||||||| |||||||||||| | |||||| |||||||||| ||| ||||| |||||| |
|
|
| T |
37435275 |
ggatacaacaacatagaggatacatttcccaattggctagaaactctacaagagttacaggtactcagtttaagatcaaataaacttaatggttcaatca |
37435176 |
T |
|
| Q |
217 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
316 |
Q |
| |
|
||||||||| |||||| ||| | ||| | ||||| ||||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
37435175 |
cctgttctaacaccaaccatcctttttctaagttaagaatttttgacatcttcggtaacaattttagtggatccttgccaacatcatgtatcaagaactt |
37435076 |
T |
|
| Q |
317 |
tcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgtg |
395 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||| |||| | |||||||||||||||||||| |
|
|
| T |
37435075 |
tcaaggaatgatgaatgtgaatgatagccagattggtttgcaatacatgggtaagaacaattactataatgattctgtg |
37434997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 37413660 - 37413908
Alignment:
| Q |
17 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
116 |
Q |
| |
|
||||||| ||||||||| ||||||||||| || || |||||||||||| |||||||||| ||||||||| | || | ||||||||||| |||||||| |
|
|
| T |
37413660 |
aggaaatacatttgagatgataaagttgaacggaaatcaattggaaggaccattaccacagtctttggcttagtgcataaatcttgaagttctggacctt |
37413759 |
T |
|
| Q |
117 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
216 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37413760 |
ggtgacaacaatatagaggatacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatca |
37413859 |
T |
|
| Q |
217 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgt |
265 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||| |||| |
|
|
| T |
37413860 |
cctgttctagcacaaagcatacatttcccaagttgagaatattttatgt |
37413908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 185 - 395
Target Start/End: Complemental strand, 37428548 - 37428339
Alignment:
| Q |
185 |
tttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagt |
284 |
Q |
| |
|
|||| |||||||||| || |||||| ||||||| ||||||| ||||| ||| |||| ||||||||||||||||| || ||| ||| || | ||||||| |
|
|
| T |
37428548 |
tttaagatcaaataaactgcatggtacaatcacttgttctatgaccaaacatccatt-cccaagttgagaattttcgacatctataataaaatttttagt |
37428450 |
T |
|
| Q |
285 |
gggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactata |
384 |
Q |
| |
|
|| |||||||| ||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |||| || ||||||||| |
|
|
| T |
37428449 |
ggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaaggccaattactata |
37428350 |
T |
|
| Q |
385 |
atgattctgtg |
395 |
Q |
| |
|
||||||||||| |
|
|
| T |
37428349 |
atgattctgtg |
37428339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 326
Target Start/End: Complemental strand, 26437777 - 26437679
Alignment:
| Q |
228 |
accaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatg |
326 |
Q |
| |
|
||||| || |||||||| |||||||| ||||||||||||| ||||| ||||||||||| | ||||| ||| | | |||||| |||||| |||||||| |
|
|
| T |
26437777 |
accaaccaaacatttcctaagttgagggtttttgatgtctccaacaataattttagtggctctttgcccacaacgtacatcaaaaactttaaaggaatg |
26437679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 326
Target Start/End: Complemental strand, 26451146 - 26451048
Alignment:
| Q |
228 |
accaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatg |
326 |
Q |
| |
|
||||| || |||||||| |||||||| ||||||||||||| ||||| ||||||||||| | ||||| ||| | | |||||| |||||| |||||||| |
|
|
| T |
26451146 |
accaaccaaacatttcctaagttgagggtttttgatgtctccaacaataattttagtggctctttgcccacaacgtacatcaaaaactttaaaggaatg |
26451048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 14553037 - 14552686
Alignment:
| Q |
17 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||||| || |||||| |||||||| |||||||||| || |||||| |
|
|
| T |
14553037 |
aggaaatgcatttgagactataaagttgaatggaaaccaattgaaaggaccactaccacagtcattggctcactgttcaaatcttgaagtattagacctt |
14552938 |
T |
|
| Q |
117 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
216 |
Q |
| |
|
|||||||||| | | |||||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
14552937 |
ggtgacaacagcatagaggatacatttcccaattggctagaaactctacaagagttacaagtgctaagtttacgatcaaatcatcttcacggagcaatca |
14552838 |
T |
|
| Q |
217 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
316 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14552837 |
cctgttctagcatcaagcattcatttcctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgccaacatcatgcatcaagaactt |
14552738 |
T |
|
| Q |
317 |
tcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggt |
368 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14552737 |
tcaaggaatgatgaacgtgaatgacagccaaattggtttgcaatacatgggt |
14552686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 16843491 - 16843837
Alignment:
| Q |
17 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||| |||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
16843491 |
aggaaatgcatttcagactataaagttgaatggaaaccaattggaaggaccattaccacagtctttgtctcactgttcatatcttgaagttttggacctt |
16843590 |
T |
|
| Q |
117 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
216 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||| |||||||||| |||||||||||| | ||||||||| |||||||||||||| | ||||| |
|
|
| T |
16843591 |
ggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagttacaggtactcgttttacgatctaataatcttcatggagtaatca |
16843690 |
T |
|
| Q |
217 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
316 |
Q |
| |
|
| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
16843691 |
cttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgccaacatcatgcatccagaactt |
16843790 |
T |
|
| Q |
317 |
tcaaggaatgatgaatgtgaatgacagccaaattggtttgcaataca |
363 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
16843791 |
tcaaggaatgatgaatgtggatgatagccagattggtttgcaataca |
16843837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 33 - 395
Target Start/End: Original strand, 16846175 - 16846536
Alignment:
| Q |
33 |
actataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaacgttg |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
16846175 |
actataaagttgaatggcaaccaattggaaggaccattaccacggtctttagctaactgttcatatcttgaagttttggaccttggtgacaacaacatag |
16846274 |
T |
|
| Q |
133 |
aggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaa |
232 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||||||||| || | |||||| | |||||||| ||| ||||| ||||||| |||||||||||||| |
|
|
| T |
16846275 |
aggatacatttcccagttggcttgaaactctacaagagttacatgtactcagtttaaggtcaaataaactttatggttcaatcacatgttctagcaccaa |
16846374 |
T |
|
| Q |
233 |
gcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaat |
332 |
Q |
| |
|
|||| ||||| |||| ||||||||||| || ||| | ||||| || ||||| || |||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
16846375 |
gcatccattt-ccaaattgagaattttggacatcttcgataacaaattcagtggaccgttgccaacatcatgtatcaagaattttcaaggaatgatgaac |
16846473 |
T |
|
| Q |
333 |
gtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgtg |
395 |
Q |
| |
|
| |||||| | ||| ||||||||| |||| ||| || |||||||||||||||||||| |
|
|
| T |
16846474 |
gcgaatgataataaaactggtttgcagtacatgggaaaggtcaattactataatgattctgtg |
16846536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 24218226 - 24218604
Alignment:
| Q |
17 |
aggaaatgcatttgagactataaagttgaatggcaaccaattggaaggagcattaccacaatctttggctaactgttcatatcttgaagttttggacctt |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |||| || | |||||||||||||||||| |
|
|
| T |
24218226 |
aggaaatgcattcgagactataaagttgaatggcaaccaattggagggaccattaccacagtctttggctcactgcacacaacttgaagttttggacctt |
24218325 |
T |
|
| Q |
117 |
ggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatca |
216 |
Q |
| |
|
|| ||||||| | | | ||||||||||| ||||| ||||| ||| | |||||||||||| | ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
24218326 |
ggagacaacatcataaacgatacatttcccaattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtggaatca |
24218425 |
T |
|
| Q |
217 |
cctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactt |
316 |
Q |
| |
|
| |||||||||||||| || ||||||| ||| ||||||||| ||||||||| || ||||| |||| ||| |||||||||| ||| ||||||| || |
|
|
| T |
24218426 |
cttgttctagcaccaaacaatcatttccgaagatgagaatttacgatgtctctggtaataatttccgtggccccgtgccaacatcttgcctcaagaattt |
24218525 |
T |
|
| Q |
317 |
tcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgattctgtg |
395 |
Q |
| |
|
|||||||||||| |||||||||| || || |||||||||||||| |||| || |||| ||||||||||||||| |
|
|
| T |
24218526 |
tcaaggaatgattaatgtgaatgtcaataaatctggtttgcaatacatgggtaaggccaattattataatgattctgtg |
24218604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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