View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_high_18 (Length: 367)
Name: NF11740_high_18
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_high_18 |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 2691810 - 2691470
Alignment:
| Q |
11 |
caaagggaaatcaagatagataatggaaaattatcttaatatttgatttatagaatagtctagggtactcttgatctctttagatattctttaagtttat |
110 |
Q |
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| T |
2691810 |
caaaggggaatcaagatagataatggaaaattatcatattacctgatttatagaacagtctaggatactcttgatctctttagatattctttaagtttat |
2691711 |
T |
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| Q |
111 |
caacatgctctctgaaaaaacattttaaaatgtaccaactatcgaatttccgatgacaaaatatccttgaaacccagtttcacttcagcaacatgagtca |
210 |
Q |
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| T |
2691710 |
caacatcctctctgaaaaaatatttcaaa-tgcaccaatcattgaactcccggtgacaaaatatcctcgaaatccagtttcacttcagcaacatgagtca |
2691612 |
T |
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| Q |
211 |
tcacatttaccttgtatggatagagtaagaaaaatatttgatattttattttcctcatgataaagtatgcactcagagatcaaaacactaaaagttattg |
310 |
Q |
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| T |
2691611 |
tcacatttaccttgtatggatagagtaagaaaaatatttgatattttatttttctcgtgataaagtatgcagtcaaagatcaaaacattgaaagttattg |
2691512 |
T |
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| Q |
311 |
atcagaaaagcaatgcatttgaaagaaatgtacattgattac |
352 |
Q |
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| T |
2691511 |
atcagaaaagcaatgcatttgaaagaaatgtacattgattac |
2691470 |
T |
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Target: scaffold0295 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 6624 - 6666
Alignment:
| Q |
181 |
aacccagtttcacttcagcaacatgagtcatcacatttacctt |
223 |
Q |
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| T |
6624 |
aacccaatttcacttcagcaacatgagtcaacacgtttacctt |
6666 |
T |
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