View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_high_28 (Length: 292)
Name: NF11740_high_28
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 1814997 - 1815256
Alignment:
| Q |
11 |
tgagatgaaaagctgctatatcatacgctgctgctgccatttgtggttcttcatagctccctaaccatattctgctcttcttacctggctctctaatttc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1814997 |
tgagatgaaaagctgctatatcatacgctgctgctgccatttgtggttcttcatagctccctaaccatattctgctcttcttacctggctctctaatttc |
1815096 |
T |
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| Q |
111 |
tgatacaaatttcccccattttcttttcctaactcctatataggatgttggaggagtaatatttgcatgttcttgctcttgcatgttgtttgattcttcc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1815097 |
tgatacaaatttcccccattttcttttcctaactcctatataggatgttggaggagtaacatttgcatgttcttgctcttgcatgttgtttgattcttcc |
1815196 |
T |
|
| Q |
211 |
attgtaaaataatctaattggacaaaacagtgagagagagatatatataatgcaatgcaagtaa |
274 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1815197 |
attgtaaaataatctaattggacaaaacagt----gagagatatatataatgcaatgcaagtaa |
1815256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 1794968 - 1795098
Alignment:
| Q |
18 |
aaaagctgctatatcatacgctgctgctgccatttgtggttcttcatagctccctaaccatattctgctcttcttacctggctctctaatttctgataca |
117 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| || | | || ||||||||| || |
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| T |
1794968 |
aaaagctgctatatcatatgctattgctgccatttgtggttcttcatagttccctaaccatattctgcttttcttctcttgaacccttatttctgatgca |
1795067 |
T |
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| Q |
118 |
aatttcccccattttcttttcctaactccta |
148 |
Q |
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||||||||||||||||| ||||||||||||| |
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| T |
1795068 |
aatttcccccattttctcttcctaactccta |
1795098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 1812373 - 1812585
Alignment:
| Q |
11 |
tgagatgaaaagctgctatatcatacgctgctgctgccatttgtggttcttcatagctccctaaccatattctgctcttcttacctggctctctaatttc |
110 |
Q |
| |
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|||| |||||||||||||||||| | || | ||||||||||||||||||||||||| | ||||||||||||||| | ||| | ||| | || || |||| |
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| T |
1812373 |
tgaggtgaaaagctgctatatcacatgcagttgctgccatttgtggttcttcataggtacctaaccatattctgatgttcctcccttgatcccttatttt |
1812472 |
T |
|
| Q |
111 |
tgatacaaatttcccccattttcttttcctaactcctatatagga---------tgttggaggagtaatatttgcatgttcttgctcttgcatgttgttt |
201 |
Q |
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|||| ||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| || ||| ||||||| ||||||||||| ||||| |
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| T |
1812473 |
tgatgcaaatttcccccattttctcttcctaactcccatattggatgatgctggtgttggaggaggaacattcacatgttcatgctcttgcattatgttt |
1812572 |
T |
|
| Q |
202 |
gattcttccattg |
214 |
Q |
| |
|
||||||||||||| |
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| T |
1812573 |
gattcttccattg |
1812585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 1796002 - 1796053
Alignment:
| Q |
157 |
gttggaggagtaatatttgcatgttcttgctcttgcatgttgtttgattctt |
208 |
Q |
| |
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|||||||||| || ||| |||||||||||||||||||| |||||||||||| |
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| T |
1796002 |
gttggaggaggaacattcacatgttcttgctcttgcatgatgtttgattctt |
1796053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 14489007 - 14488864
Alignment:
| Q |
16 |
tgaaaagctgctatatcatacgctgctgctgc---catttgtggttcttcatagctccctaaccatattctgctcttcttacctggctctctaatttctg |
112 |
Q |
| |
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|||||||||||||||||||| ||||||||||| || |||||||||||||||||| | |||||||||| |||| ||||| ||| | || | ||||||| |
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| T |
14489007 |
tgaaaagctgctatatcatatgctgctgctgctgccacttgtggttcttcatagcttc-taaccatattttgcttttcttcccttgatcctttatttctg |
14488909 |
T |
|
| Q |
113 |
atacaaatttcccccattttcttttcctaactcctatataggatg |
157 |
Q |
| |
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|| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
14488908 |
atggaaatttcccccattttcccttcctaactcctatataggatg |
14488864 |
T |
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