View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_high_3 (Length: 857)
Name: NF11740_high_3
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 803; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 803; E-Value: 0
Query Start/End: Original strand, 14 - 840
Target Start/End: Complemental strand, 41622790 - 41621964
Alignment:
| Q |
14 |
tggacatcaaacatttacagaactgcaaaatgcaggactctcgactccacaccttgcatacatgtactttaatatagcacacacagagtttatcattcgc |
113 |
Q |
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| T |
41622790 |
tggacatcaaacatttacagaactgcaaaatgcaggactctcgactccataccttgcatacatgtactttaatatagcacacacagagtttatcattcgc |
41622691 |
T |
|
| Q |
114 |
aattagcatagctattaaaaaacaactatgcaattgcaaaccattacgatagttaccacatggtaggtcagccttaaaatccataaattgtaccaaataa |
213 |
Q |
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| T |
41622690 |
aattagcatagctattaaaaaacaactatgcaattgcaaaccattacgatagttaccacatggtaggtcagccttaaaatccataaattgtaccaaataa |
41622591 |
T |
|
| Q |
214 |
ttatagccaatgtcaaatttatgtatcggcgagggtggagttatgactcaaccccaagccatagtgttaaagatcctcaaagccaaatatttcccaagtg |
313 |
Q |
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| T |
41622590 |
ttatagccaatgtcaaatttatgtatcggcgagggtggagttatgactcaaccccaagccatagtgttaaagatcctcaaagccaaatatttcccaagtg |
41622491 |
T |
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| Q |
314 |
ggaacttcatggaggttaattttggtcgtaatccaagttactcgtggcgaagcatgtgcatagtaagagcgattttgagagaagggtaccgattgaagat |
413 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41622490 |
ggaacttcatggaggttaatattggtcgtaatccaagttactcgtggcgaagcatgtgcatagtaagagcgattttgagagaagggtgccgattgaagat |
41622391 |
T |
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| Q |
414 |
tggtgatggtaaatcaatttcactttgaatgagccatggctttaaaatggcgaaaaattcattcctaattcaaacatgagtgaacaagtattacaaataa |
513 |
Q |
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| T |
41622390 |
tggtgatggtaaatcaatttcactttgaatgagccatggctttaaaatggcaaaaaattcattcctaattcaaacatgagtgaacaagtattacaaatga |
41622291 |
T |
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| Q |
514 |
aggttggtgacttgatcaataggcaaagtcgtgctggaacctagcaatagcagctcaggtgttgaatgtgttacatatgcagtagttgttgcaaactaat |
613 |
Q |
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| T |
41622290 |
aggttggtgacttgatcaataggcaaagtcgtgctggaacctagcaatagcagctcaggtgttgaatgtgttacatatgcagtagttgttgcaaactaat |
41622191 |
T |
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| Q |
614 |
atgtataatgtggtacagctagatacccaaattttgaatgttgtgtcaaacagggtgtttccggtcaaaagcacttaccgactgtgcatcaatgacttag |
713 |
Q |
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| T |
41622190 |
atgtataatgtggtacagctagatacccaaattttgaatgttgtgtcaaacagggtgtttccggtcaaaagcacttaccgactgtgcatcaatgacttag |
41622091 |
T |
|
| Q |
714 |
tcgattccaatcatctatgtgttaaaggtaattggaactggatttgtaatttgcatactttatgtggagggtgtgtaaagatgttaaaccaactacaaca |
813 |
Q |
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| T |
41622090 |
tcgattccaatcatctatgtgttaaaggtaattggaactggatttgtaatttgcatactttatgtggagggcgtgtaaagatgttaaaccaactacaaca |
41621991 |
T |
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| Q |
814 |
cggttgagagagaaggaagtcatttgt |
840 |
Q |
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| T |
41621990 |
cggttgagagagaaggaagtcatttgt |
41621964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 770 - 840
Target Start/End: Complemental strand, 41621940 - 41621871
Alignment:
| Q |
770 |
actttatgtggagggtgtgtaaagatgttaaaccaactacaacacggttgagagagaaggaagtcatttgt |
840 |
Q |
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| T |
41621940 |
actttatgtggagggcgt-tagagatgttaagccaactgcaacaaagttgagagagaaggatatcatttgt |
41621871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 49161716 - 49161654
Alignment:
| Q |
86 |
tatagcacacacagagtttatcattcgcaattagcatagctattaaaaaacaactatgcaatt |
148 |
Q |
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| T |
49161716 |
tatagcacataccgagtttatcattagcaattaatacagctattaaaaaacaactatgcaatt |
49161654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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