View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11740_high_30 (Length: 261)
Name: NF11740_high_30
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 9352183 - 9352319
Alignment:
| Q |
22 |
cttcgtgttgctaatgaagttgaaaagactcatcctagagttgcttatttatgtaagtgtttcttcaacttctattctcttccgttttcattgttacaat |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9352183 |
cttcgtgttgctaatgaagttgaaaagactcatcctagagttgcttatttatgtaagtgtttcttcaacttctattctcttccattttcattgttacaat |
9352282 |
T |
|
| Q |
122 |
gacagattatagagtaactcaccaggtcaacattgaa |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9352283 |
gacagattatagagtaactcaccaggtcaacattgaa |
9352319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 426723 - 426665
Alignment:
| Q |
22 |
cttcgtgttgctaatgaagttgaaaagactcatcctagagttgcttatttatgtaagtg |
80 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
426723 |
cttcgtgttgctaatgaagttgaaaaaactcatcctagagttgcttatttatgtaagtg |
426665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 650190 - 650245
Alignment:
| Q |
26 |
gtgttgctaatgaagttgaaaagactcatcctagagttgcttatttatgtaagtgt |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
650190 |
gtgttgctaatgaagttgaaaagactcatcctaaagttgcttatttatgtaagtgt |
650245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 9352319 - 9352367
Alignment:
| Q |
194 |
attgatgaattactcataggtcatgttatgctatgttttgtttggtgat |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9352319 |
attgatgaattactcataggtcatgttatgctatgttttgtttggtgat |
9352367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 52596096 - 52596158
Alignment:
| Q |
22 |
cttcgtgttgctaatgaagttgaaaagactcatcctagagttgcttatttatgtaagtgtttc |
84 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
52596096 |
cttcgtgttgctaatgaggttgaaaagactcatcctagagttgcttatctctgtaagtatttc |
52596158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University