View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_high_31 (Length: 261)
Name: NF11740_high_31
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 937001 - 936755
Alignment:
| Q |
1 |
aagttgaggaagctgattgagaatagcaatgatgagaaaatatatataagcaactctatgaaactgttcaaacaaattccttggaatgaaagtgagaatt |
100 |
Q |
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| T |
937001 |
aagttgaggaagctgattgagaatagcaatgatgagaaaatatatataagcaactctatgaaactgttcaaacaaattccttggaatgaaagtgagaatt |
936902 |
T |
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| Q |
101 |
gagtatttagcagttcgaattgaatttccgaaaaactcaaaattctcattggttttctcaggatcatttatatataccaatcttgcatcttcatctctaa |
200 |
Q |
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| T |
936901 |
gagtatttagcagttcgaattgaatttccgaaaaactcaaaattctcattggttttctcaggatcatttatatataccaatcttgcatcttcatctctaa |
936802 |
T |
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| Q |
201 |
gttctctttgtgacatggttaacccttcagaatcaccaccacctttt |
247 |
Q |
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| T |
936801 |
gttctctttgtgacatggttaacccttcagaatcaccaccacctttt |
936755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 16941481 - 16941397
Alignment:
| Q |
2 |
agttgaggaagctgattgagaatagcaatgatgagaaaatatatataagcaactctatgaaactgttcaaacaaattccttggaa |
86 |
Q |
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|||||||| | |||||| ||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16941481 |
agttgaggtaactgattaagaatagcaattataaggaaataaatataagcaactctatgaaactgttcaaacaaattcctaggaa |
16941397 |
T |
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