View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_high_38 (Length: 229)
Name: NF11740_high_38
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_high_38 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 45231715 - 45231943
Alignment:
| Q |
1 |
tcactcaacatagtatcaaaatctccgtgttctcccaattttttatctgtacaagnnnnnnnacccaaaggagataaagggaagcgaggtgatgacgcct |
100 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45231715 |
tcactcaacatagtatcaaaatctctgcgttctcccaattttttatctgtacaagtttttttacccaaaggagataaagggaagcgaggtgatgacgcct |
45231814 |
T |
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| Q |
101 |
tattttgaggtctcaagatcgtttctgtttgtaacttcattttagttgaatcctccaaatcattaaatgcaggaaatgatctgtaatgtttaaaagatac |
200 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45231815 |
tattttgaagtctcaagatcgtttctgtttgtgacttcattttagttgaatcctccaaatcattaaatgcaggaaatgatttgtaatgtttaaaagatac |
45231914 |
T |
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| Q |
201 |
tggctcctcaatttcacagtttgaatggc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45231915 |
tggctcctcaatttcacagtttgaatggc |
45231943 |
T |
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