View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11740_high_40 (Length: 206)
Name: NF11740_high_40
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_high_40 |
 | |
|
| [»] chr5 (17 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
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|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37711123 - 37711328
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37711123 |
cttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
37711222 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37711223 |
aacatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcacataaagggaactggcattgcagaat |
37711322 |
T |
|
| Q |
201 |
gttgaa |
206 |
Q |
| |
|
|||||| |
|
|
| T |
37711323 |
gttgaa |
37711328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37702302 - 37702507
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37702302 |
cttccaattggttgccattcaactttatagtctcaaatgcatttcctttggagaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
37702401 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
200 |
Q |
| |
|
|||| |||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||||||| ||| || ||||||||||| |||||||||||| |
|
|
| T |
37702402 |
aatagagagatgaggaaatgttcccagacattgtggaatcatacctgtcaaattgttgtgagccaaattgagaatgtaaagggaacttgcattgcagaat |
37702501 |
T |
|
| Q |
201 |
gttgaa |
206 |
Q |
| |
|
|||||| |
|
|
| T |
37702502 |
gttgaa |
37702507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 37401539 - 37401334
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401539 |
cttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
37401440 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
200 |
Q |
| |
|
| || ||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37401439 |
tacattaagagaagttaatgttcccaggcattgtggaatcatacctgtcaaattgttgtgagccaaatcgagcacataaagggaactggcattgcagaat |
37401340 |
T |
|
| Q |
201 |
gttgaa |
206 |
Q |
| |
|
|||||| |
|
|
| T |
37401339 |
gttgaa |
37401334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37639365 - 37639570
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639365 |
cttccaattggttgccattcaactttatagtctcaaatgcatttcctttggagaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
37639464 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
200 |
Q |
| |
|
| | ||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639465 |
tacagtaagagaagttaatgttcccaggcattgtggaatcatacctgtcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
37639564 |
T |
|
| Q |
201 |
gttgaa |
206 |
Q |
| |
|
|||||| |
|
|
| T |
37639565 |
gttgaa |
37639570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37823523 - 37823728
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823523 |
cttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
37823622 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
200 |
Q |
| |
|
| || ||| | |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823623 |
tacatgaagagaatttaatgttcccaggcattgtggaatcatacctgtcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
37823722 |
T |
|
| Q |
201 |
gttgaa |
206 |
Q |
| |
|
|||||| |
|
|
| T |
37823723 |
gttgaa |
37823728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 37393418 - 37393213
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37393418 |
cttccaattggtttccattcaattttatagtctcaaatatatttcctttggaaaaggttccaggaatgcttccacagaggttgttcatttgcatatccaa |
37393319 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
200 |
Q |
| |
|
|||| |||||| || |||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
37393318 |
aatagagagataagaaaatgttcctagacattgtggaatcatacctgtcaaattgttgtgagccaaattgaggatataaagggaactagcattgcagaat |
37393219 |
T |
|
| Q |
201 |
gttgaa |
206 |
Q |
| |
|
|||||| |
|
|
| T |
37393218 |
gttgaa |
37393213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37532719 - 37532924
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37532719 |
cttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgcatatccaa |
37532818 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
200 |
Q |
| |
|
| || ||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| | || ||| |||| |||||||||||| |
|
|
| T |
37532819 |
tacattaagagaagttaatgttcccaggcattgtggaatcatacctgtcaaattgttgtgagccaaattgagaacattcaggtaacttgcattgcagaat |
37532918 |
T |
|
| Q |
201 |
gttgaa |
206 |
Q |
| |
|
|||||| |
|
|
| T |
37532919 |
gttgaa |
37532924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37593823 - 37594028
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37593823 |
cttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgcatatccaa |
37593922 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
200 |
Q |
| |
|
| || ||| || |||||||| ||||||||||||||||||||| | ||||||||||||||||||| ||| | || ||| |||| |||||||||||| |
|
|
| T |
37593923 |
tacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacattcaggtaacttgcattgcagaat |
37594022 |
T |
|
| Q |
201 |
gttgaa |
206 |
Q |
| |
|
|||||| |
|
|
| T |
37594023 |
gttgaa |
37594028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37696214 - 37696419
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37696214 |
cttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgtttccatagaggttgttcatttgcatatccaa |
37696313 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
200 |
Q |
| |
|
| || ||| || |||||||| ||||||||||||||||||||| | ||||||||||||||||||| ||| | || ||| |||| |||||||||||| |
|
|
| T |
37696314 |
tacattaagagaagttaatgttcccaggcattgtggaatcatacctgttaaattgttgtgagccaaattgagaacattcaggtaacttgcattgcagaat |
37696413 |
T |
|
| Q |
201 |
gttgaa |
206 |
Q |
| |
|
|||||| |
|
|
| T |
37696414 |
gttgaa |
37696419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 37382867 - 37382667
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
|||||||| |||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37382867 |
cttccaatcggtttccattcaactttattgtctcaaatgcatttcctttggagaaggttctaggaatgtgtccatagaggttgttcatttgcatatccaa |
37382768 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
200 |
Q |
| |
|
| | ||| |||||||||||| | ||||||||||||||| || | ||||||||||||||||||| ||||| || |||||||| || ||||| ||| |
|
|
| T |
37382767 |
taccgaaagagaaggaaatgttcccaagcattgtggaatcatgccagttaaattgttgtgagccaaattgagcacattcagggaacttgcgttgcacaat |
37382668 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
37382667 |
g |
37382667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 37413706 - 37413547
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
|||||||||| || || |||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| |
|
|
| T |
37413706 |
cttccaattgatttccgttcaactttatcatctcaaatgtatttcctttggaaaaggttctaggaaagcttccatacaagttgttcatttgcatatccaa |
37413607 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtg |
160 |
Q |
| |
|
||| | ||| |||||||||||||||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
37413606 |
tatagaaagagaaggaaatgttcctaggcattgtggaatcatgcctgttaaattgttgtg |
37413547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 37435329 - 37435502
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| || ||||||||| ||||||| ||| |||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
37435329 |
cttctaattggttgccattcaactttatagtctcgaaggcatttcctctggaaaaagttttaggcatgcttccattaaggttgttcatttgcatatccaa |
37435428 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagca |
174 |
Q |
| |
|
|| | ||| |||||||||||| ||||||| |||||| || ||| |||| |||||||| ||||||| ||||| |
|
|
| T |
37435429 |
aacggaaagaaaaggaaatgttcccaggcattttggaattatgcctgtcaatttgttgtgggccaaattgagca |
37435502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 37696498 - 37696554
Alignment:
| Q |
150 |
aaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaatgttgaa |
206 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
37696498 |
aaattgttgtgagccaaattgagggtataaagggaacttgcattgcagaatgttgaa |
37696554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 37594110 - 37594163
Alignment:
| Q |
153 |
ttgttgtgagccaaatcgagcatataaagggaactggcattgcagaatgttgaa |
206 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
37594110 |
ttgttgtgagccaaattgagggtataaagggaacttgcattgcagaatgttgaa |
37594163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 37401252 - 37401199
Alignment:
| Q |
153 |
ttgttgtgagccaaatcgagcatataaagggaactggcattgcagaatgttgaa |
206 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||| |||||||||||||||||| |
|
|
| T |
37401252 |
ttgttgtgagccaaattgagggtacgaagggaacttgcattgcagaatgttgaa |
37401199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 37639652 - 37639705
Alignment:
| Q |
153 |
ttgttgtgagccaaatcgagcatataaagggaactggcattgcagaatgttgaa |
206 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| || |||| |||||||||| |
|
|
| T |
37639652 |
ttgttgtgagccaaattgagggtataaagggaacttgcgttgcggaatgttgaa |
37639705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 37711410 - 37711463
Alignment:
| Q |
153 |
ttgttgtgagccaaatcgagcatataaagggaactggcattgcagaatgttgaa |
206 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| || |||| |||||||||| |
|
|
| T |
37711410 |
ttgttgtgagccaaattgagggtataaagggaacttgcgttgcggaatgttgaa |
37711463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 14552995 - 14553189
Alignment:
| Q |
5 |
caattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaaaata |
104 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14552995 |
caattggtttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcatttgcatatccaaaata |
14553094 |
T |
|
| Q |
105 |
tagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaa |
199 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
14553095 |
gagagaagaggaaatgtccccaggcattgtggaatcatacctgtcaaattgttgtgagccaaattgagcatataaagggaacttgcattgcagaa |
14553189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 1e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 16843537 - 16843332
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843537 |
cttccaattggtttccattcaactttatagtctgaaatgcatttcctttggaaaaggttttaggaatgcttccatagaggttgttcatttgcatatccaa |
16843438 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgcagaat |
200 |
Q |
| |
|
| || ||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||| ||| |||||||||||| |
|
|
| T |
16843437 |
tacattaagagaagttaatgttcctaggcattgtggaatcatacctgtcaaattgttgtgagccaaattaagcaaattaagggtacttgcattgcagaat |
16843338 |
T |
|
| Q |
201 |
gttgaa |
206 |
Q |
| |
|
|||||| |
|
|
| T |
16843337 |
gttgaa |
16843332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 24218270 - 24218077
Alignment:
| Q |
3 |
tccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaaaa |
102 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24218270 |
tccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgttcatttgcatatccaata |
24218171 |
T |
|
| Q |
103 |
tatagagattaggaaatgttcctaggcattgtggaatcatacctttcaaattgttgtgagccaaatcgagcatataaagggaactggcattgca |
196 |
Q |
| |
|
| | |||| |||||||||||| ||||||||||||||| | ||| | |||||||||| |||||||| ||||| || |||||||| |||||||| |
|
|
| T |
24218170 |
cagaaagataaggaaatgttcccaggcattgtggaatcgttcctgttaaattgttgttagccaaattgagcaaattcagggaacttgcattgca |
24218077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 16846205 - 16846034
Alignment:
| Q |
1 |
cttccaattggttgccattcaaccttatagtctcaaatgcatttcctttggaaaaggttctaggaatgcttccatagaggttgttcatttgcatatccaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16846205 |
cttccaattggttgccattcaactttatagtgacaaacacatttcctttggaaaaggttctaggaatgcttccaaagaggttgttcatttgcatatccaa |
16846106 |
T |
|
| Q |
101 |
aatatagagattaggaaatgttcctaggcattgtgga----atcatacctttcaaattgttgtgagccaaat |
168 |
Q |
| |
|
| || ||| || |||||||| | |||||||||| ||||||| | | ||||||||||||||||||| |
|
|
| T |
16846105 |
tacattaagagaagttaatgttcccaagcattgtggaatatatcatacatattaaattgttgtgagccaaat |
16846034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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