View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_high_5 (Length: 605)
Name: NF11740_high_5
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_high_5 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 7 - 605
Target Start/End: Complemental strand, 937660 - 937062
Alignment:
| Q |
7 |
gcagcacagacagacgtgattgtacacaatgcaacaagaaagaacgacaacataatgatttcataattcatccgcgtctctagtctacttctttttgatg |
106 |
Q |
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| T |
937660 |
gcagcacaaacagacgtgattgtacacaatgcaacaagaaagaacgacaacataatgatttcataattcatccgcgtctctagtctacttcttttcgatg |
937561 |
T |
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| Q |
107 |
gagctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaacaccaagtgcccaactagtattcttaagctcacatcctctaagcac |
206 |
Q |
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| T |
937560 |
gagctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaacaccaagtgcccaactagtattcttaagctcacatcctctaagcac |
937461 |
T |
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| Q |
207 |
aatgttggttgatccaagtgataacttcttaccatcgatttccatattcgccataaatccatatatattcctattcggtttctcacacttgatcaaacca |
306 |
Q |
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| T |
937460 |
aatgttggttgatccaagtgataacttcttaccatcgatttccatattcgccataaatccatatatattcctattcggtttctcacacttgatcaaacca |
937361 |
T |
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| Q |
307 |
gtatacctcggttgaacctttgaacctgtctcctgtttcgcatacctagtcttcaaattactctcaccatcaagattaatagtttgcacatatgcaacac |
406 |
Q |
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| T |
937360 |
gtatacctcggttgaacctttgaacctgtctcctgtttcgcatacctagtcttcaaattactctcaccatcaagattaatagtttgcacatatgcaacac |
937261 |
T |
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| Q |
407 |
cagttggatcactagttgataacaaaacaatatcacaaggaattgtttcattcgttttgatttttacaatctcaccaacacgaatatccttccatttctt |
506 |
Q |
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| T |
937260 |
cagttggatcactagttgataacaaaacaatatcacaaggaattgtttcatttgttttgatttttacaatctcaccaacacgaatatccttccatttctt |
937161 |
T |
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| Q |
507 |
ctcaatgaaactaccgtcattcatcaaaattgttgctaacctgttattctcaactttatctgaattgtgtctcctccaatcatcaaaagcatctttcac |
605 |
Q |
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| T |
937160 |
ctcaatgaaactaccgtcattcatcaaaattgttgctaacctgttattctcaactttatctgaattgtgtctcctccaatcttcaaaagcatctttcac |
937062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 106 - 605
Target Start/End: Complemental strand, 16942045 - 16941543
Alignment:
| Q |
106 |
ggagctcctgaattgttaagcatagctttagtctcgcggccacaatagactgcaacaccaagtgcccaactagtattcttaagctcacatcctctaagca |
205 |
Q |
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| T |
16942045 |
ggagctcctgagttgttgagcatagcttttgtctcacgaccacaatacacggcaacaccaaccacacaattagtattcttaagttcacatcctctaagta |
16941946 |
T |
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| Q |
206 |
caatgttggttgatccaagtgataacttcttaccatcgatttccatattcgccataaatccatatatattcctattcggtttctcacacttgatcaaacc |
305 |
Q |
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| T |
16941945 |
caatattcgaggaaccaagtgacaatctcttttcatcaacctccattgtagcctgaaatccatatatattcctatttggtttctcgcacttaatcaaacc |
16941846 |
T |
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| Q |
306 |
agtatacctcggtt------gaacctttgaacctgtctcctgtttcgcatacctagtcttcaaattactctcaccatcaagattaatagtttgcacatat |
399 |
Q |
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| T |
16941845 |
actaaacctctccttttcatgaaacttaaattgagtctcttgttttgcatatctagtcttcaaattagactcaccatctagattaagagtttgaacgtaa |
16941746 |
T |
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| Q |
400 |
gcaacaccagttggatcactagttgataacaaaacaatatcacaaggaattgtttcattcgttttgatttttacaatctcaccaacacgaatatccttcc |
499 |
Q |
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| T |
16941745 |
gcaacaccagtaggatcactcgtcgacaacaaaacaaaatcacaaggaatcggttcatttgcattgattttaatgatctcaccaactctaatatctttcc |
16941646 |
T |
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| Q |
500 |
atttcttctcaatgaaactaccgtcattcatcaaaattgttgctaacctgttattctcaactttatctgaattgtgtctcctccaatcatcaaaagcatc |
599 |
Q |
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| T |
16941645 |
atttcttctcaatgaaatgac---cattaaccaaaaccaatcctaacctattattctcaactttatctgatctatgtctcctccaatcctcatatgcatc |
16941549 |
T |
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| Q |
600 |
tttcac |
605 |
Q |
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| T |
16941548 |
tttcac |
16941543 |
T |
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