View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_10 (Length: 524)
Name: NF11740_low_10
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_10 |
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| [»] scaffold0057 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 16 - 516
Target Start/End: Complemental strand, 42046514 - 42046016
Alignment:
| Q |
16 |
cacaatgaagcttacattttcatcaatgatgataagtacgtgctattggattatgctcctggaaccaccaacgataagattttgcatgggccatctctcg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42046514 |
cacaatgaagcttacattttcatcaatgatgataagtacgtgctattggattatgctcctggaaccaccaacgataagattttgcatgggccatctcttg |
42046415 |
T |
|
| Q |
116 |
ttagtgatgggtttaaatcacttgctcctacaatatttcaaagctatgcaattgattgtgcatttgacaccgataacaaccaggcattcatctttcatga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42046414 |
ttagtgatgggtttaaatcacttgctcctacaatatttcaaagctatgcaattgattgtgcatttgacaccgataacaaccaggcattcatctttcatga |
42046315 |
T |
|
| Q |
216 |
aaaattttgtgctctaatagactatgctccatactcttgcaacgacaaattaatctccggtcctnnnnnnnttgctgacgtgtttccttttttcaaagga |
315 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42046314 |
aaatttttgtgctctaatagactatgctccatactcttgcaacgacaaattaatctccggtcctaaaaaaattgctgacgtgtttccttttttcaaagga |
42046215 |
T |
|
| Q |
316 |
acggtgtttgaaagcggaaatgacgccgcatataggtcaactaagggcaaagaagcttacttattcaaaggagaccaatatgctcgtatagactatatgg |
415 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
42046214 |
acggtgtttgaaagcggaatagacgccgcatataggtcaactaagggcaaagaagcttacttatttaaaggagaccaatatgctcgtatagac--tatgg |
42046117 |
T |
|
| Q |
416 |
aatcaaccgtcttgtttcgagtatcaagagcattaaaggtttttcatctttttgtggcacaatctttgaaaatgggtcatttgatgcagctttttcttct |
515 |
Q |
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| T |
42046116 |
aatcaaccgtcttgtttcgagtatcaagagcattaaaggtttttcatctttctgtggcacaatctttgaaaatgggtcatttgatgcagctttttcttct |
42046017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 3352084 - 3352578
Alignment:
| Q |
17 |
acaatgaagcttacattttcatcaatgatgataagtacgtgctattggattatgctcctggaaccaccaacgataagattttgcatgggccatctctcgt |
116 |
Q |
| |
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|||||||||||||| ||||||| |||||| ||||| | |||||||| ||||| || ||||| |||||||||||||||| ||||||| ||| || |
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| T |
3352084 |
acaatgaagcttactttttcatgaatgat---aagtatatcctattggactatgcaccgggaactggcaacgataagattttgtatgggccgagtcttgt |
3352180 |
T |
|
| Q |
117 |
tagtgatgggtttaaatcacttgctcctacaatatttcaaagctatgcaattgattgtgcatttgacaccgataacaaccaggcattcatctttcatgaa |
216 |
Q |
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| | |||||||||| ||||||||||| ||| |||||| |||||||| ||| |||||| | ||| |||||||||||||| | |||||||||||| ||||| |
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| T |
3352181 |
tcgcgatgggtttagatcacttgctcataccatatttggaagctatggaatagattgttcctttaacaccgataacaacgaagcattcatcttttatgaa |
3352280 |
T |
|
| Q |
217 |
aaattttgtgctctaatagactatgctccatactcttgcaacgacaaattaatctccggtcctnnnnnnnttgctgacgtgtttccttttttcaaaggaa |
316 |
Q |
| |
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|| ||||||||||| ||||||||||| |||||||| |||||| |||| ||||||| || ||| |||||||| ||||||||||||||||||||| |
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| T |
3352281 |
aacttttgtgctctcatagactatgcaccatactcgggcaacgtcaaaataatctcaggccctaagaaaattgctgacatgtttccttttttcaaaggaa |
3352380 |
T |
|
| Q |
317 |
cggtgtttgaaagcggaaatgacgccgcatataggtcaactaagggcaaagaagcttacttattcaaaggagaccaatatgctcgtatagactatatgga |
416 |
Q |
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| ||||||||| ||| || || |||| ||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||||| |||||| |
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| T |
3352381 |
ccatgtttgaaaagggagtagatgctgcatttaggtcaactaagggcaaataagtttacttattcaaaggagacaagtatgctcgtataga--ttatgga |
3352478 |
T |
|
| Q |
417 |
atcaaccgtcttgtttcgagtatcaagagcatta---aaggtttttcatctttttgtggcacaatctttgaaaatgggtcatttgatgcagctttttctt |
513 |
Q |
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| ||||||||| ||| |||||||||| ||||| | || ||| | ||| |||||||||||||||||||||| | |||||||||||||| ||| |
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| T |
3352479 |
accaaccgtctggttcaaagtatcaagaacattatcgacgggtttatgtgtttccgtggcacaatctttgaaaatgg---aattgatgcagcttttgctt |
3352575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 119 - 411
Target Start/End: Original strand, 14452464 - 14452756
Alignment:
| Q |
119 |
gtgatgggtttaaatcacttgctcctacaatatttcaaagctatgcaattgattgtgcatttgacaccgataacaaccaggcattcatctttcatgaaaa |
218 |
Q |
| |
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||||||| |||||||||| ||||| |||||||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||||| |
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| T |
14452464 |
gtgatggttttaaatcacatgctcatacaatatttggaagctatggaattgattgtgcctttgacaccgataacaacgaggcattcatcttttatgaaaa |
14452563 |
T |
|
| Q |
219 |
attttgtgctctaatagactatgctccatactcttgcaacgacaaattaatctccggtcctnnnnnnnttgctgacgtgtttccttttttcaaaggaacg |
318 |
Q |
| |
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||||||||||| ||||||||||| ||| |||| ||| |||||| ||||| | |||||| |||| ||| |||||||||||||||||||||| |
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| T |
14452564 |
tttttgtgctctcatagactatgcaccacactccgacaaagacaaaataatcactggtcctaagaaaattgccgacatgtttccttttttcaaaggaacc |
14452663 |
T |
|
| Q |
319 |
gtgtttgaaagcggaaatgacgccgcatataggtcaactaagggcaaagaagcttacttattcaaaggagaccaatatgctcgtatagactat |
411 |
Q |
| |
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|| || |||| |||| ||||| ||| || |||||| ||||||||||| | ||||||||||||||||| | |||||||||||||||||| |
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| T |
14452664 |
gtattcgaaaatggaatagacgctgcagtaagatcaactgtgggcaaagaagttcacttattcaaaggagacaagtatgctcgtatagactat |
14452756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 42471697 - 42471310
Alignment:
| Q |
17 |
acaatgaagcttacattttcatcaatgatgataagtacgtgctattggattatgctcctggaaccaccaacgataagattttgcatgggccatctctcgt |
116 |
Q |
| |
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|||| ||||||||| ||||||| |||||| || ||||| ||||||||||||||||| |||||| |||||||| || ||||| | || || | || |
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| T |
42471697 |
acaacgaagcttactttttcatgaatgat---aaatacgtactattggattatgctccgggaacccccaacgatgaggttttgaacggacctgaatttgt |
42471601 |
T |
|
| Q |
117 |
tagtgatgggtttaaatcacttgctcctacaatatttcaaagctatgcaattgattgtgcatttgacaccgataacaaccaggcattcatctttcatgaa |
216 |
Q |
| |
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| |||||||||| |||||||||| ||| ||||| |||||||| |||||||||||| |||||||| ||||||| | |||||||||| ||| ||||| |
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| T |
42471600 |
tcgtgatgggttccgttcacttgctcataccgtatttggaagctatggaattgattgtgcctttgacacggataacacctaggcattcatattttatgaa |
42471501 |
T |
|
| Q |
217 |
aaattttgtgctctaatagactatgctccatactcttgcaacgacaaattaatctccggtcctnnnnnnnttgctgacgtgtttccttttttcaaaggaa |
316 |
Q |
| |
|
|| |||||||||| |||||||||||||| | || | |||||| ||||||| |||||| | ||||| ||||||||||||||||||| | |
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| T |
42471500 |
aacctttgtgctctcatagactatgctccgcagtcagatgaagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaaggga |
42471401 |
T |
|
| Q |
317 |
cggtgtttgaaagcggaaatgacgccgcatataggtcaactaagggcaaagaagcttacttattcaaaggagaccaatatgctcgtataga |
407 |
Q |
| |
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| |||||||||| ||||| || || || | |||||||| | | |||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
42471400 |
ccgtgtttgaaaacggaatcgatgctgcgttcaggtcaaccacagacaaagaagcttacttattcaaaggagacaagtatgctcgtataga |
42471310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 63698 - 63622
Alignment:
| Q |
19 |
aatgaagcttacattttcatcaatgatgataagtacgtgctattggattatgctcctggaaccaccaacgataagatttt |
98 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||| | ||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
63698 |
aatgaagcatactttttcatcaatgat---aagctcttgctattggattatgctcccggaaccagcaacgataagatttt |
63622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 37603 - 37560
Alignment:
| Q |
61 |
ttggattatgctcctggaaccaccaacgataagattttgcatgg |
104 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
37603 |
ttggattatgctcccggaaccagcaacgataagattttacatgg |
37560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 411
Target Start/End: Complemental strand, 63424 - 63309
Alignment:
| Q |
296 |
tgtttccttttttcaaaggaacggtgtttgaaagcggaaatgacgccgcatataggtcaactaagggcaaagaagcttacttattcaaaggagaccaata |
395 |
Q |
| |
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||||||||||||| ||||||||| |||||| |||| |||||||||| ||||||||| | |||||| | |||||| |||| ||||||| | || |
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| T |
63424 |
tgtttccttttttagaaggaacgggttttgaacatggaatagacgccgcattcaggtcaactttgaacaaagaggtttacttgttcagaggagacaagta |
63325 |
T |
|
| Q |
396 |
tgctcgtatagactat |
411 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
63324 |
tgctcgtatagactat |
63309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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