View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11740_low_11 (Length: 454)

Name: NF11740_low_11
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11740_low_11
NF11740_low_11
[»] chr2 (37 HSPs)
chr2 (11-428)||(24585186-24585597)
chr2 (19-79)||(34146180-34146240)
chr2 (16-79)||(1005513-1005576)
chr2 (16-79)||(4170557-4170620)
chr2 (16-79)||(33324818-33324881)
chr2 (16-79)||(7876714-7876777)
chr2 (19-82)||(14217212-14217275)
chr2 (16-79)||(28746707-28746770)
chr2 (16-79)||(38602377-38602440)
chr2 (6-72)||(6497694-6497760)
chr2 (18-79)||(6124173-6124234)
chr2 (18-79)||(20536775-20536836)
chr2 (16-79)||(7807429-7807492)
chr2 (18-72)||(2319282-2319336)
chr2 (16-82)||(4355322-4355388)
chr2 (11-79)||(18300972-18301040)
chr2 (19-79)||(21104482-21104542)
chr2 (19-79)||(22484267-22484327)
chr2 (23-79)||(31236248-31236304)
chr2 (16-72)||(35342324-35342380)
chr2 (16-79)||(1776491-1776554)
chr2 (16-79)||(4561788-4561851)
chr2 (16-79)||(5588107-5588170)
chr2 (16-79)||(12206025-12206088)
chr2 (16-79)||(16561800-16561863)
chr2 (23-82)||(25933562-25933621)
chr2 (16-71)||(35996651-35996706)
chr2 (16-79)||(40308952-40309015)
chr2 (16-83)||(40432049-40432115)
chr2 (19-72)||(14824155-14824208)
chr2 (18-78)||(3545638-3545698)
chr2 (23-79)||(45159360-45159416)
chr2 (16-79)||(22570937-22571000)
chr2 (18-72)||(44156604-44156658)
chr2 (19-72)||(8482975-8483028)
chr2 (26-79)||(12819301-12819354)
chr2 (19-84)||(43214567-43214632)
[»] scaffold0285 (1 HSPs)
scaffold0285 (16-77)||(13252-13313)
[»] chr6 (20 HSPs)
chr6 (13-82)||(31079609-31079678)
chr6 (16-84)||(234301-234369)
chr6 (16-79)||(26327155-26327218)
chr6 (16-79)||(27083985-27084048)
chr6 (16-79)||(1036881-1036944)
chr6 (16-79)||(31195924-31195987)
chr6 (19-70)||(32017986-32018037)
chr6 (16-79)||(32130714-32130777)
chr6 (16-84)||(7188834-7188899)
chr6 (16-70)||(8356967-8357021)
chr6 (17-79)||(19128153-19128215)
chr6 (18-79)||(7254930-7254991)
chr6 (19-79)||(29892966-29893026)
chr6 (16-79)||(6708096-6708159)
chr6 (16-83)||(31741211-31741278)
chr6 (19-79)||(3212477-3212537)
chr6 (16-79)||(3299141-3299204)
chr6 (16-70)||(13607840-13607894)
chr6 (18-72)||(25834553-25834607)
chr6 (18-79)||(11105286-11105347)
[»] chr8 (33 HSPs)
chr8 (11-79)||(37372259-37372327)
chr8 (16-79)||(32877437-32877500)
chr8 (16-79)||(45217275-45217338)
chr8 (19-84)||(12580611-12580676)
chr8 (16-72)||(22201392-22201448)
chr8 (16-79)||(2872965-2873028)
chr8 (16-79)||(19436274-19436337)
chr8 (16-79)||(19572423-19572486)
chr8 (16-79)||(32638911-32638974)
chr8 (16-79)||(34901437-34901500)
chr8 (16-79)||(36483435-36483498)
chr8 (16-79)||(40412435-40412498)
chr8 (16-72)||(5818366-5818422)
chr8 (19-79)||(6028487-6028547)
chr8 (16-84)||(13422203-13422271)
chr8 (16-79)||(16384617-16384680)
chr8 (16-79)||(25022125-25022188)
chr8 (16-79)||(28876621-28876684)
chr8 (11-74)||(32424926-32424989)
chr8 (16-71)||(32759381-32759436)
chr8 (16-70)||(19948051-19948105)
chr8 (20-82)||(27109223-27109285)
chr8 (18-72)||(43771761-43771815)
chr8 (16-72)||(5539442-5539497)
chr8 (16-72)||(38388674-38388730)
chr8 (16-79)||(7411636-7411699)
chr8 (16-72)||(27886197-27886253)
chr8 (16-72)||(27944855-27944911)
chr8 (16-79)||(4245940-4246003)
chr8 (41-87)||(10349236-10349282)
chr8 (42-79)||(24100255-24100292)
chr8 (16-81)||(27968101-27968166)
chr8 (16-81)||(28025087-28025152)
[»] chr7 (34 HSPs)
chr7 (16-79)||(4291509-4291572)
chr7 (16-79)||(25969394-25969457)
chr7 (16-82)||(1043126-1043192)
chr7 (18-79)||(35159862-35159923)
chr7 (16-84)||(40095642-40095710)
chr7 (11-79)||(44960185-44960253)
chr7 (16-71)||(26845951-26846006)
chr7 (16-79)||(47238662-47238725)
chr7 (18-79)||(39520797-39520858)
chr7 (18-79)||(42896999-42897060)
chr7 (16-68)||(9250477-9250529)
chr7 (19-79)||(11829686-11829746)
chr7 (19-79)||(26773770-26773830)
chr7 (16-84)||(27353913-27353981)
chr7 (16-79)||(554935-554998)
chr7 (16-79)||(34238155-34238218)
chr7 (16-79)||(48163405-48163468)
chr7 (18-84)||(16564415-16564481)
chr7 (18-84)||(16601181-16601247)
chr7 (16-70)||(48153620-48153674)
chr7 (16-84)||(27398102-27398170)
chr7 (19-79)||(33454067-33454127)
chr7 (20-72)||(36202837-36202889)
chr7 (19-79)||(36758054-36758114)
chr7 (19-79)||(36767578-36767638)
chr7 (16-79)||(38064592-38064655)
chr7 (41-79)||(21179854-21179892)
chr7 (16-70)||(34122672-34122726)
chr7 (19-68)||(11058360-11058409)
chr7 (16-69)||(21409398-21409451)
chr7 (18-79)||(40041376-40041437)
chr7 (16-79)||(38262996-38263059)
chr7 (18-72)||(19510527-19510581)
chr7 (16-72)||(23079095-23079151)
[»] chr5 (28 HSPs)
chr5 (16-79)||(10656820-10656883)
chr5 (16-80)||(30284662-30284726)
chr5 (18-84)||(26795050-26795116)
chr5 (18-83)||(33829749-33829814)
chr5 (16-84)||(30777577-30777645)
chr5 (16-79)||(30918378-30918441)
chr5 (16-79)||(32707886-32707949)
chr5 (16-79)||(39690818-39690881)
chr5 (18-79)||(6243215-6243276)
chr5 (18-79)||(12852119-12852180)
chr5 (16-79)||(1639837-1639900)
chr5 (16-79)||(1795392-1795455)
chr5 (16-79)||(9792319-9792382)
chr5 (16-71)||(26716281-26716336)
chr5 (16-71)||(26986021-26986076)
chr5 (16-79)||(32728764-32728827)
chr5 (11-77)||(26691618-26691684)
chr5 (11-77)||(26961350-26961416)
chr5 (16-70)||(41392767-41392821)
chr5 (18-74)||(27938168-27938224)
chr5 (16-79)||(35746306-35746369)
chr5 (18-72)||(5721994-5722048)
chr5 (16-78)||(42366158-42366220)
chr5 (16-69)||(3934843-3934896)
chr5 (19-71)||(11906226-11906278)
chr5 (19-71)||(22774562-22774614)
chr5 (18-70)||(41233388-41233440)
chr5 (19-78)||(17138312-17138370)
[»] chr4 (29 HSPs)
chr4 (16-84)||(5834825-5834893)
chr4 (16-79)||(5325776-5325839)
chr4 (16-79)||(28376996-28377059)
chr4 (18-79)||(31946262-31946323)
chr4 (16-79)||(8064164-8064227)
chr4 (16-79)||(40694070-40694133)
chr4 (28-83)||(51858828-51858883)
chr4 (18-84)||(14795018-14795084)
chr4 (16-78)||(19738698-19738760)
chr4 (16-82)||(38492314-38492380)
chr4 (19-82)||(27981893-27981956)
chr4 (24-79)||(47607110-47607165)
chr4 (16-79)||(52122924-52122987)
chr4 (18-72)||(55901196-55901250)
chr4 (16-69)||(44121897-44121950)
chr4 (19-84)||(52721260-52721324)
chr4 (16-79)||(2586336-2586399)
chr4 (16-79)||(10257700-10257763)
chr4 (16-79)||(17892248-17892311)
chr4 (16-79)||(41145612-41145675)
chr4 (16-82)||(52572207-52572273)
chr4 (17-79)||(53322337-53322399)
chr4 (18-79)||(51674858-51674919)
chr4 (19-79)||(44522035-44522095)
chr4 (16-79)||(1176981-1177044)
chr4 (18-72)||(42472626-42472680)
chr4 (18-79)||(24296498-24296559)
chr4 (18-79)||(36511991-36512052)
chr4 (19-79)||(3403633-3403693)
[»] chr1 (31 HSPs)
chr1 (19-79)||(38948732-38948792)
chr1 (16-79)||(1043227-1043290)
chr1 (16-83)||(20409609-20409676)
chr1 (16-79)||(37104120-37104183)
chr1 (18-79)||(3426848-3426909)
chr1 (16-85)||(6916929-6916998)
chr1 (16-72)||(43189662-43189718)
chr1 (16-79)||(28949296-28949359)
chr1 (16-79)||(37346903-37346966)
chr1 (16-79)||(38330427-38330490)
chr1 (16-79)||(52895768-52895831)
chr1 (18-79)||(8132183-8132244)
chr1 (16-77)||(41676044-41676105)
chr1 (11-82)||(2223029-2223100)
chr1 (16-79)||(2472909-2472972)
chr1 (16-79)||(9781642-9781705)
chr1 (17-72)||(48715281-48715336)
chr1 (16-69)||(1036469-1036522)
chr1 (16-69)||(29167957-29168010)
chr1 (19-71)||(14167092-14167144)
chr1 (24-79)||(34432446-34432501)
chr1 (16-70)||(36367747-36367801)
chr1 (18-78)||(5984228-5984288)
chr1 (16-72)||(33039620-33039676)
chr1 (19-79)||(34096610-34096670)
chr1 (23-77)||(32381121-32381175)
chr1 (23-71)||(10822410-10822458)
chr1 (16-84)||(13013047-13013115)
chr1 (31-79)||(24849364-24849412)
chr1 (18-70)||(28659357-28659409)
chr1 (19-79)||(31653460-31653520)
[»] scaffold0640 (1 HSPs)
scaffold0640 (16-79)||(8147-8210)
[»] chr3 (37 HSPs)
chr3 (16-79)||(52684201-52684264)
chr3 (18-84)||(10225208-10225274)
chr3 (16-84)||(1528497-1528565)
chr3 (18-82)||(6134439-6134503)
chr3 (16-84)||(7327707-7327775)
chr3 (19-71)||(13353244-13353296)
chr3 (16-84)||(37996866-37996934)
chr3 (16-79)||(35389750-35389813)
chr3 (16-79)||(55269067-55269130)
chr3 (18-72)||(2567444-2567498)
chr3 (18-72)||(25937121-25937175)
chr3 (18-79)||(40497330-40497391)
chr3 (16-80)||(19349645-19349709)
chr3 (23-79)||(19420905-19420961)
chr3 (19-79)||(28882736-28882796)
chr3 (18-82)||(48122822-48122886)
chr3 (24-84)||(52121175-52121235)
chr3 (16-84)||(53192493-53192561)
chr3 (16-79)||(13748502-13748565)
chr3 (16-71)||(22289776-22289831)
chr3 (16-79)||(22611429-22611492)
chr3 (16-79)||(28704727-28704790)
chr3 (17-79)||(52505889-52505950)
chr3 (16-69)||(19879148-19879201)
chr3 (11-72)||(29915868-29915929)
chr3 (11-72)||(29965021-29965082)
chr3 (16-79)||(22310705-22310768)
chr3 (16-79)||(41742127-41742190)
chr3 (16-79)||(42229674-42229737)
chr3 (16-79)||(42464962-42465025)
chr3 (16-69)||(30226430-30226483)
chr3 (18-79)||(30787619-30787680)
chr3 (18-71)||(47642025-47642078)
chr3 (16-69)||(49419245-49419298)
chr3 (16-79)||(1679753-1679816)
chr3 (18-79)||(2122704-2122768)
chr3 (16-60)||(25700779-25700823)
[»] scaffold0005 (1 HSPs)
scaffold0005 (18-84)||(44647-44713)
[»] scaffold0037 (1 HSPs)
scaffold0037 (16-84)||(27836-27904)
[»] scaffold0250 (1 HSPs)
scaffold0250 (16-77)||(5514-5575)
[»] scaffold0240 (1 HSPs)
scaffold0240 (18-79)||(10600-10661)
[»] scaffold0112 (1 HSPs)
scaffold0112 (18-79)||(42122-42183)
[»] scaffold0060 (1 HSPs)
scaffold0060 (16-79)||(30499-30562)
[»] scaffold0177 (1 HSPs)
scaffold0177 (18-84)||(25587-25653)


Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Complemental strand, 24585597 - 24585186
Alignment:
Q  11 cagagaggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagctgatatacgtaaggaaaaataaagaga 110  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||||| | |||||||||||||    
T  24585597 cagacaggtatcggtgcaggatacgcagg-gatacgatacatcatccattttgaagtatcggggcttcagaactgatatacgtaggaaaaaataaagaga 24585499  T
Q  111 aaaaggtaaacataattgacacattttttaaaatggcaaacccacatatcgtaatttcagtgattggtttaagaaatttttgggttacaattggtttaag 210  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24585498 aaaaggtaaacataattgacacatttttgaaaatggcaaacccacaaatcgtaatttcagtgattggtttaagaaatttttgggttacaattggtttaag 24585399  T
Q  211 attatgatacataatttaagaaatnnnnnnnnnnngactaaattatctgtaattgttaatcaataataatatattttacaaaatgacataacttctatta 310  Q
    ||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24585398 attatgatacataatttaagaaat----aaaaaaagactaaattatctgtaattgttaatcaataataatatattttacaaaatgacataacttctatta 24585303  T
Q  311 tttaatctcaattattctcctttgatgtccctagcaaacaactaggtttctagattcaagaacaccaaaagagtactaatagaaatgtctaaaattcgaa 410  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24585302 -ttaatctcaattattctcctttgatgtccctagcaaacaactaggtttctagattcaagaacaccaaaagagtactaatagaaatgtctaaaattcgaa 24585204  T
Q  411 aacctagagttaacataa 428  Q
    ||||||||| ||||||||    
T  24585203 aacctagagctaacataa 24585186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 34146240 - 34146180
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  34146240 tatcggtgcagaatacgcagaagatacgatacgtcatccattttaaagtatcggagcttca 34146180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 1005576 - 1005513
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||    
T  1005576 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcagagcttca 1005513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 4170557 - 4170620
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||||    
T  4170557 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggagcttca 4170620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 33324881 - 33324818
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||    
T  33324881 aggtatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcggggcttca 33324818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 7876777 - 7876714
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  7876777 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 7876714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 14217212 - 14217275
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagag 82  Q
    ||||||||||| ||||||||| ||||| |||| ||||||||||| |||||||||||||||||||    
T  14217212 tatcggtgcagaatacgcaggggatacaatacgtcatccattttgaagtatcggagcttcagag 14217275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 28746707 - 28746770
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||||| ||||||    
T  28746707 aggtatcggtgcaggatacgcaggggatacgatacgtcaaccattttgaagtatcggggcttca 28746770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 38602377 - 38602440
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  38602377 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 38602440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 6497694 - 6497760
Alignment:
Q  6 agaagcagagaggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||| |||| |||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||    
T  6497694 agaatcagacaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 6497760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 6124234 - 6124173
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||| ||||||    
T  6124234 gtatcggtgcaggatacacaggggatacaatacgtcatccattttaaagtatcggggcttca 6124173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 20536836 - 20536775
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||| ||||||||| ||||||    
T  20536836 gtatcggtgcaggatatgcaggggatacgatacgtcatccattttgaagtatcggggcttca 20536775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 7807429 - 7807492
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||| || |||||||||| |||||||||| ||||||||||| ||||||||| ||||||    
T  7807429 aggtatcggtacaagatacgcaggggatacgatacgtcatccattttgaagtatcggggcttca 7807492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 2319336 - 2319282
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||| |||||||||    
T  2319336 gtatcggtgcaagatacgcaggggatacgatacgtcatccattttgaagtatcgg 2319282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 4355388 - 4355322
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagag 82  Q
    |||||||||||||| |||||||||  ||||||||| ||||||||||| ||||||||  |||||||||    
T  4355388 aggtatcggtgcagaatacgcagggaatacgatacgtcatccattttgaagtatcgaggcttcagag 4355322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 18301040 - 18300972
Alignment:
Q  11 cagagaggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||| |||||||||||||| |||| |||| |||||||||| ||||||||||| ||||||| | ||||||    
T  18301040 cagacaggtatcggtgcagaatacacaggggatacgatacgtcatccattttgaagtatcagggcttca 18300972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 21104542 - 21104482
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||| |||||||||  |||||||||| |||||||||||||||||| || ||||||    
T  21104542 tatcggtgcaagatacgcagaggatacgatacgtcatccattttaaagtattggggcttca 21104482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 22484327 - 22484267
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||| |||||||||||||||  ||||| ||||||||||||||| ||||||||| ||||||    
T  22484327 tatcgatgcaggatacgcagggaatacggtacatcatccattttgaagtatcggggcttca 22484267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 31236248 - 31236304
Alignment:
Q  23 ggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||| ||||| |||| | ||||||||||||||||||| ||||||    
T  31236248 ggtgcaggatacgcaggggatacaatacgttatccattttaaagtatcggggcttca 31236304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 35342380 - 35342324
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||||||||||||||| | |||||| ||| ||||||||||| |||||||||    
T  35342380 aggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcgg 35342324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 1776491 - 1776554
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||| ||||||| | |||||||||| ||| ||||||| ||||||||| ||||||    
T  1776491 aggtatcggtgcagaatacgcaagggatacgatacgtcaaccattttgaagtatcggggcttca 1776554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 4561851 - 4561788
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||| || |  ||||||||| ||||||||||| |||||| |||||||||    
T  4561851 aggtatcggtgcaggatacacaaggaatacgatacgtcatccattttgaagtattggagcttca 4561788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 5588170 - 5588107
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||| |||||  ||  |||||||||| ||||||||||| ||||||||||||||||    
T  5588170 aggtatcggtgcaagatacaaagaggatacgatacgtcatccattttgaagtatcggagcttca 5588107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 12206088 - 12206025
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||| |||| ||||| |||  |||||||||| ||||||||||||||||| ||||||||||    
T  12206088 aggtatcgatgcaagatacacagatgatacgatacgtcatccattttaaagtaccggagcttca 12206025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 16561863 - 16561800
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||| ||||||| | |||||| ||| ||||||||||| ||||||||| ||||||    
T  16561863 aggtatcggtgcagaatacgcaagggatacggtacgtcatccattttgaagtatcggggcttca 16561800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 25933621 - 25933562
Alignment:
Q  23 ggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagag 82  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||  | |||||||||    
T  25933621 ggtgcatgatacgcaggggatacgatacatcatccattttgaagtatatgggcttcagag 25933562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 35996706 - 35996651
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcg 71  Q
    ||||||||||||| |||||||||| ||||| ||||||||| |||||| ||||||||    
T  35996706 aggtatcggtgcaagatacgcaggggatacaatacatcattcattttgaagtatcg 35996651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 40308952 - 40309015
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||| | |||||| ||| ||||| ||||| ||||||||| ||||||    
T  40308952 aggtatcggtgcaggatacgcatgggatacggtacgtcatctattttgaagtatcggggcttca 40309015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 40432049 - 40432115
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagc 83  Q
    |||||||| ||||||||  ||||| |||||||||| ||||||||||||||||||| ||| ||||||||    
T  40432049 aggtatcgatgcaggattggcagg-gatacgatacttcatccattttaaagtatccgagattcagagc 40432115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 14824208 - 14824155
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||| |||||||| |||||||||||| ||||| ||||| |||||||||    
T  14824208 tatcggtgcatgatacgcaagagatacgatacgtcatctattttgaagtatcgg 14824155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 3545638 - 3545698
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttc 78  Q
    |||||||||||| ||||| |  ||||||||||| ||||||||||| |||||||| ||||||    
T  3545638 gtatcggtgcagaatacgtaaaagatacgatacgtcatccattttgaagtatcgaagcttc 3545698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 45159360 - 45159416
Alignment:
Q  23 ggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||| |||||||| | |||||||||| ||||||||||| ||||||||| ||||||    
T  45159360 ggtgcaagatacgcaagggatacgatacgtcatccattttgaagtatcggggcttca 45159416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 22571000 - 22570937
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||  |||||| ||| ||||| ||||| ||||||| | ||||||    
T  22571000 aggtatcggtgcaggatacgcagaggatacggtacgtcatctattttgaagtatctgggcttca 22570937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 44156658 - 44156604
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||| |||| |||||||||| |||||||||  ||||||||||| |||||||||    
T  44156658 gtatcgatgcatgatacgcaggggatacgatatgtcatccattttgaagtatcgg 44156604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 8482975 - 8483028
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||||||||||||   |||||||||| |||| |||||| |||||||||    
T  8482975 tatcggtgcaggatacgcaaaggatacgatacgtcattcattttgaagtatcgg 8483028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 12819354 - 12819301
Alignment:
Q  26 gcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||| |||| |||||| ||||||||||||||| ||||||| | ||||||    
T  12819354 gcaggatacacaggggatacggtacatcatccattttgaagtatcagggcttca 12819301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 43214632 - 43214567
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    ||||| |||||||||| || | |||||||||| ||||||||||| ||||||| |  ||||||||||    
T  43214632 tatcgatgcaggatacacatgggatacgatacgtcatccattttgaagtatctggacttcagagct 43214567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 13313 - 13252
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagctt 77  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  13313 aggtatcggtgcaggatacgcaggagatacgatacgtcatccattttgaagtatcggagctt 13252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 31079678 - 31079609
Alignment:
Q  13 gagaggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagag 82  Q
    |||| |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||    
T  31079678 gagaagtatcggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatcggagcttcagag 31079609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 234369 - 234301
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||    
T  234369 aggtatcggtgcaggatacgcaggagatacgatacgtcaaccattttgaagtatcggggcttcagagct 234301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 26327218 - 26327155
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||    
T  26327218 aggtatcggtgcaggatacacaggagatacgatacgtcatccattttgaagtatcggggcttca 26327155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 27084048 - 27083985
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||    
T  27084048 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttca 27083985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 1036881 - 1036944
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  1036881 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 1036944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 31195924 - 31195987
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| |||||| | |||||||    
T  31195924 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatggaagcttca 31195987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 32018037 - 32017986
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatc 70  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| |||||||    
T  32018037 tatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatc 32017986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 32130714 - 32130777
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||| |||||||||||||||| |||||| ||| |||| |||||||||||||||| ||||||    
T  32130714 aggtatcagtgcaggatacgcaggggatacggtacgtcattcattttaaagtatcggggcttca 32130777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 7188834 - 7188899
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||||||||||| |||||| ||   |||||||||| ||||||||| |||||||||||    
T  7188834 aggtatcggtgcaggatacgcaggggatacggta---catccattttgaagtatcggggcttcagagct 7188899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 8357021 - 8356967
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatc 70  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||    
T  8357021 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 8356967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 19128215 - 19128153
Alignment:
Q  17 ggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||| |||||||||||| |||| |||||||||| ||| |||||||||||||| |||||||||    
T  19128215 ggtattggtgcaggatacacaggggatacgatacgtcaaccattttaaagtattggagcttca 19128153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 7254991 - 7254930
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||| ||||| |||| ||||||||||||| |||||||| |||||||| |||||||    
T  7254991 gtatcggtgcatgatacacaggggatacgatacatcgtccattttgaagtatcgaagcttca 7254930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 29893026 - 29892966
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||| ||||||||||||||| |||||  ||||||||||||||||||||||| | ||||||    
T  29893026 tatcgatgcaggatacgcaggggatacagtacatcatccattttaaagtatctgggcttca 29892966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 6708096 - 6708159
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||| ||||| |||| ||||| |||  ||||||||||||||||||||| ||||||    
T  6708096 aggtatcggtgcatgatacacaggggatacaatatgtcatccattttaaagtatcggggcttca 6708159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 31741211 - 31741278
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagc 83  Q
    |||||||| |||| ||| || ||| |||||||||| ||||||||||| |||||||||| |||||||||    
T  31741211 aggtatcgatgcatgatgcgtaggggatacgatacgtcatccattttgaagtatcggaacttcagagc 31741278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 3212537 - 3212477
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||| || |  ||||||||| ||||||||||| ||||||||| ||||||    
T  3212537 tatcggtgcaggatacacaaggaatacgatacgtcatccattttgaagtatcggggcttca 3212477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 3299204 - 3299141
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||| ||||  |||||| ||||||||| ||||| ||||||| | ||||||    
T  3299204 aggtatcggtgcaggatatgcagaggatacggtacatcatctattttgaagtatcagggcttca 3299141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 13607840 - 13607894
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatc 70  Q
    ||||||| |||||||||| ||||  |||||||||| ||||||||||| |||||||    
T  13607840 aggtatcagtgcaggatatgcagaggatacgatacgtcatccattttgaagtatc 13607894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 25834553 - 25834607
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    ||||| |||||||||||||| | |||||||||| ||||||| ||| |||||||||    
T  25834553 gtatcagtgcaggatacgcacgggatacgatacgtcatccaatttgaagtatcgg 25834607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 11105347 - 11105286
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||| |||||||||||||    ||||| ||| ||||||||||||||||||| ||||||||    
T  11105347 gtatcgatgcaggatacgcaaagaatacggtacgtcatccattttaaagtatcagagcttca 11105286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 37372327 - 37372259
Alignment:
Q  11 cagagaggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  37372327 cagacaggtatcagtgcaggatacgcaggagatacgatacgtcatccattttgaagtatcggagcttca 37372259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 32877500 - 32877437
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||    
T  32877500 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttca 32877437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 45217275 - 45217338
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||    
T  45217275 aggtatcggtgcaggatacgcaggggatacaatatatcatccattttaaagtatcggggcttca 45217338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 12580611 - 12580676
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||| ||||    
T  12580611 tatcggtgcaggatacgcaggagatacggtacatcatctattttgaagtatcggggcttcacagct 12580676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 22201392 - 22201448
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||    
T  22201392 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgg 22201448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 2872965 - 2873028
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  2872965 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 2873028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 19436337 - 19436274
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||| | |||||| ||| ||||||||||| ||||||||||||||||    
T  19436337 aggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcggagcttca 19436274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 19572486 - 19572423
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||| | |||||| ||| ||||||||||| ||||||||||||||||    
T  19572486 aggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcggagcttca 19572423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 32638911 - 32638974
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||| ||||||||    
T  32638911 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcagagcttca 32638974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 34901437 - 34901500
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  34901437 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 34901500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 36483498 - 36483435
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  36483498 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 36483435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 40412498 - 40412435
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||    
T  40412498 aggtaacggtgcaggatacgcaggggatacgatacatcatccattttgaagtattggggcttca 40412435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 5818366 - 5818422
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||||||||||||||| | |||||||||| ||||||||||| |||||||||    
T  5818366 aggtatcggtgcaggatacgcaagtgatacgatacgtcatccattttgaagtatcgg 5818422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 6028547 - 6028487
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  6028547 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 6028487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 13422271 - 13422203
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||||| ||||| |||||| ||| ||||||||||| ||||||||| |||||| ||||    
T  13422271 aggtatcggtgcaggatatgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagct 13422203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 16384680 - 16384617
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||| |||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  16384680 aggtatcggtgcaggatactcaggggatacggtacgtcatccattttgaagtatcggggcttca 16384617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 25022188 - 25022125
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||| |||||| || ||||||    
T  25022188 aggtatcggtgcaggatacgcaggagatacggtatgtcatccattttgaagtattggggcttca 25022125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 28876621 - 28876684
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||  ||| ||||||||||| ||||||||| ||||||    
T  28876621 aggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttca 28876684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 32424989 - 32424926
Alignment:
Q  11 cagagaggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggag 74  Q
    |||| |||||||||||||||||||||| | |||||| ||| ||||||||||| |||||||||||    
T  32424989 cagacaggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcggag 32424926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 32759436 - 32759381
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcg 71  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||    
T  32759436 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcg 32759381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 19948051 - 19948105
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatc 70  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||    
T  19948051 aggtatcggtgcaggatacgcaggggatatgatacgtcatccattttgaagtatc 19948105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 27109223 - 27109285
Alignment:
Q  20 atcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagag 82  Q
    |||| |||| |||||| ||||||||||||||||||||||||||||| |||| | |||||||||    
T  27109223 atcgatgcatgatacgtaggagatacgatacatcatccattttaaaatatcagggcttcagag 27109285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 43771761 - 43771815
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||    
T  43771761 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 43771815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 5539497 - 5539442
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||| |||||||||    
T  5539497 aggtatcggtgcaggatacgcagg-gatacagtacatcatccattttgaagtatcgg 5539442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 38388730 - 38388674
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||||||||||||||||  ||||| ||||| |||||||||| |||||||||    
T  38388730 aggtatcggtgcaggatacgcagaggatacaatacagcatccattttgaagtatcgg 38388674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 7411699 - 7411636
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||| |||||||||| |||  ||||||||||  |||||||||| ||||||||||||||||    
T  7411699 aggtatcgatgcaggatacacagtggatacgatacgccatccattttgaagtatcggagcttca 7411636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 27886253 - 27886197
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||||||||||| |||||  |||| |||| ||||||||||| |||||||||    
T  27886253 aggtatcggtgcaggatatgcagggaatacaatacgtcatccattttgaagtatcgg 27886197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 27944911 - 27944855
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||||||||||| |||||  |||| |||| ||||||||||| |||||||||    
T  27944911 aggtatcggtgcaggatatgcagggaatacaatacgtcatccattttgaagtatcgg 27944855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 4246003 - 4245940
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||| ||||| |||||| ||| ||||| ||||| ||| ||||| ||||||    
T  4246003 aggtatcggtgcaggatatgcaggggatacggtacgtcatctattttgaagcatcggggcttca 4245940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 10349282 - 10349236
Alignment:
Q  41 gatacgatacatcatccattttaaagtatcggagcttcagagctgat 87  Q
    ||||| |||||||||||||||||||||||  ||||||||||| ||||    
T  10349282 gatacaatacatcatccattttaaagtatatgagcttcagagttgat 10349236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 24100255 - 24100292
Alignment:
Q  42 atacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  24100255 atacgatacatcatccattttgaagtatcagagcttca 24100292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 27968166 - 27968101
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcaga 81  Q
    |||||||||||||||||| |||||  |||| |||| ||||| ||||| |||||||||  |||||||    
T  27968166 aggtatcggtgcaggatatgcagggaatacaatacgtcatctatttttaagtatcgggacttcaga 27968101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 28025152 - 28025087
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcaga 81  Q
    |||||||||||||||||| |||||  |||| |||| ||||| ||||| |||||||||  |||||||    
T  28025152 aggtatcggtgcaggatatgcagggaatacaatacgtcatctatttttaagtatcgggacttcaga 28025087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 4291572 - 4291509
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||    
T  4291572 aggtatcggtgcaggatacgcaggggatacggtacatcatccattttaaagtatcggggcttca 4291509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 25969457 - 25969394
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||    
T  25969457 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttca 25969394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 1043126 - 1043192
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagag 82  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||    
T  1043126 aggtatcgatgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcagag 1043192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 35159923 - 35159862
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||    
T  35159923 gtatcggtgcagaatatgcaggggatacgatacatcatccattttgaagtatcggagcttca 35159862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 40095710 - 40095642
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| |||||| ||||    
T  40095710 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagct 40095642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 44960185 - 44960253
Alignment:
Q  11 cagagaggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||| |||| || |||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  44960185 cagacaggtgtcagtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggagcttca 44960253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 26845951 - 26846006
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcg 71  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  26845951 aggtatcggtgcaggatacgcatgagatacggtacatcatccattttgaagtatcg 26846006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 47238662 - 47238725
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||| ||||||    
T  47238662 aggtatcggtgcaatatacgcaggggatacgatacatcatccattttgaagtatcggggcttca 47238725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 39520858 - 39520797
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  39520858 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 39520797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 42897060 - 42896999
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  42897060 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 42896999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 9250477 - 9250529
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagta 68  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| |||||    
T  9250477 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagta 9250529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 11829746 - 11829686
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  11829746 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 11829686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 26773770 - 26773830
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||| | |||||||||| ||||| ||||||||||||||| ||||||    
T  26773770 tatcggtgcaggatacgcaagggatacgatacgtcatcaattttaaagtatcggggcttca 26773830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 27353981 - 27353913
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    ||||||||||||||||||||||||  ||||| ||| ||||||||||| ||||||||| |||||| ||||    
T  27353981 aggtatcggtgcaggatacgcagggaatacggtacgtcatccattttgaagtatcggggcttcacagct 27353913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 554935 - 554998
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||| |||| |||||||||| ||||| |||||| |||||||| ||||||    
T  554935 aggtatcggtgcaggatacacaggggatacgatacgtcatctattttagagtatcggggcttca 554998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 34238218 - 34238155
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||| ||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  34238218 aggtatcggtgcagaatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 34238155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 48163468 - 48163405
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||| ||||||| ||||||||| ||||||    
T  48163468 aggtatcggtgcaggatacgcaggggatacggtacgtcacccattttgaagtatcggggcttca 48163405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 16564415 - 16564481
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    ||||||| |||||||||||||| |||||| ||| ||||||||||| |||||||||  ||||||||||    
T  16564415 gtatcggggcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggacttcagagct 16564481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 16601247 - 16601181
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    ||||||| |||||||||||||| |||||| ||| ||||||||||| |||||||||  ||||||||||    
T  16601247 gtatcggggcaggatacgcaggggatacggtacgtcatccattttgaagtatcgggacttcagagct 16601181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 48153674 - 48153620
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatc 70  Q
    |||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||    
T  48153674 aggtatcggtgcagaatacggagaggatacgatacatcatccattttaaagtatc 48153620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 27398102 - 27398170
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    ||||||| |||||||||||||||| |||||  ||| ||||||||||||||||||| | |||||| ||||    
T  27398102 aggtatcagtgcaggatacgcaggggatacagtacgtcatccattttaaagtatccgggcttcatagct 27398170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 33454127 - 33454067
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||| |||||||||||||||| |||||||||| ||||||||||| || |||||| ||||||    
T  33454127 tatcagtgcaggatacgcaggggatacgatacgtcatccattttgaaatatcggggcttca 33454067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 36202837 - 36202889
Alignment:
Q  20 atcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||||||||||||| |||||| ||| ||||||||||| |||||||||    
T  36202837 atcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 36202889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 36758054 - 36758114
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||| |||||| || ||||||    
T  36758054 tatcggtgcagaatacgcaggggatacgatacatcattcattttgaagtattggggcttca 36758114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 36767578 - 36767638
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||| |||||| || ||||||    
T  36767578 tatcggtgcagaatacgcaggggatacgatacatcattcattttgaagtattggggcttca 36767638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 38064655 - 38064592
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||| ||||| |||||||| |||||||| ||  ||||||||||||||||||||| ||||||    
T  38064655 aggtatcagtgcatgatacgcatgagatacgttatgtcatccattttaaagtatcggggcttca 38064592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 21179892 - 21179854
Alignment:
Q  41 gatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  21179892 gatacgatacatcatccattttgaagtatcggagcttca 21179854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 34122672 - 34122726
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatc 70  Q
    |||||||||||||||||||||||  |||||| ||| ||||||||||| |||||||    
T  34122672 aggtatcggtgcaggatacgcagaggatacggtacgtcatccattttgaagtatc 34122726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 11058409 - 11058360
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagta 68  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||| |||||    
T  11058409 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagta 11058360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 21409451 - 21409398
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtat 69  Q
    ||||||| ||||||||||  ||||||||||||||| ||||||||||| ||||||    
T  21409451 aggtatcagtgcaggatatacaggagatacgatacgtcatccatttttaagtat 21409398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 40041437 - 40041376
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||| || ||||||||| |||||||||||||||||||| ||||| || |||| ||||||||    
T  40041437 gtatcagtacaggatacgtaggagatacgatacatcatctattttgaaatatcagagcttca 40041376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 38263059 - 38262996
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||| ||||||||||||||   ||||| ||| ||||||||||| ||||||||| ||||||    
T  38263059 aggtatcgatgcaggatacgcagagaatacggtacgtcatccattttgaagtatcggggcttca 38262996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 19510581 - 19510527
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    ||||| ||||| ||||| |||| |||||||||| ||||||||||| |||||||||    
T  19510581 gtatcagtgcatgatacacaggggatacgatacgtcatccattttgaagtatcgg 19510527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 23079095 - 23079151
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||| | ||||||||||||| |||||| ||  ||||||||||| |||||||||    
T  23079095 aggtatcgatccaggatacgcaggggatacggtatgtcatccattttgaagtatcgg 23079151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 10656883 - 10656820
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  10656883 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttaaagtatcggggcttca 10656820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 30284662 - 30284726
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcag 80  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||||||||    
T  30284662 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggagcttcag 30284726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 26795050 - 26795116
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||| | |||||| ||||    
T  26795050 gtatcggtgcaggatacgcaggggatacgatacgtcatccattttaaagtatcagggcttcacagct 26795116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 33829814 - 33829749
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagc 83  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||||||    
T  33829814 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcagagc 33829749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 30777577 - 30777645
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||| |||||| ||||    
T  30777577 aggtatcggtgcaggatacgcaagggatacgatacgtcatccattttgaagtatcggggcttcacagct 30777645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 30918441 - 30918378
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||||| ||||||    
T  30918441 aggtatcggtgcaggatacgcaggggatacaatacgtcatccattttgaagtatcggggcttca 30918378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 32707886 - 32707949
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  32707886 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 32707949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 39690818 - 39690881
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  39690818 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 39690881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 6243215 - 6243276
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||  ||||| |||| ||||||||||| ||||||||||||||||    
T  6243215 gtatcggtgcaggatacgcagaggatacaatacgtcatccattttgaagtatcggagcttca 6243276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 12852180 - 12852119
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  12852180 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 12852119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 1639837 - 1639900
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||  ||| ||||||||||| ||||||||| ||||||    
T  1639837 aggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttca 1639900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 1795455 - 1795392
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||| ||| |||||||||| ||| ||||||| ||||||||| ||||||    
T  1795455 aggtatcggtgcaggatacggaggggatacgatacgtcaaccattttgaagtatcggggcttca 1795392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 9792382 - 9792319
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||| |||||||||| |||| |||||| ||| ||||||||||||||||||||| ||||||    
T  9792382 aggtatcgatgcaggatacacaggggatacggtacgtcatccattttaaagtatcggggcttca 9792319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 26716336 - 26716281
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcg 71  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||||    
T  26716336 aggtatcggtgtaggatacgcaggggatacgatacgtcatccattttgaagtatcg 26716281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 26986076 - 26986021
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcg 71  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||||    
T  26986076 aggtatcggtgtaggatacgcaggggatacgatacgtcatccattttgaagtatcg 26986021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 32728764 - 32728827
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||| |||| |||||||||| ||||| |||||||||| ||||| ||||||||||||||||    
T  32728764 aggtatcgatgcaagatacgcaggggatacaatacatcatcaattttgaagtatcggagcttca 32728827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 26691684 - 26691618
Alignment:
Q  11 cagagaggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagctt 77  Q
    |||| |||||||||||||| ||||||||| |||||||||| ||||| ||||| ||||||||| ||||    
T  26691684 cagacaggtatcggtgcagaatacgcaggggatacgatacgtcatctattttgaagtatcggggctt 26691618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 26961416 - 26961350
Alignment:
Q  11 cagagaggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagctt 77  Q
    |||| |||||||||||||| ||||||||| |||||||||| ||||| ||||| ||||||||| ||||    
T  26961416 cagacaggtatcggtgcagaatacgcaggggatacgatacgtcatctattttgaagtatcggggctt 26961350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 41392767 - 41392821
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatc 70  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||    
T  41392767 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 41392821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 27938224 - 27938168
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggag 74  Q
    ||||||||||| |||||||| ||||||| |||| ||||||||||| |||||||||||    
T  27938224 gtatcggtgcatgatacgcatgagatacaatacgtcatccattttgaagtatcggag 27938168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 35746306 - 35746369
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||| |||| |||||| ||||||||| |||| ||||| ||||| ||||||||||||||||    
T  35746306 aggtatcgatgcatgatacgtaggagatacaatacgtcatctattttgaagtatcggagcttca 35746369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 5722048 - 5721994
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    ||||| |||||||||||||||| |||||||||| ||||| |||||||| ||||||    
T  5722048 gtatcagtgcaggatacgcaggggatacgatacgtcatcaattttaaaatatcgg 5721994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 42366158 - 42366220
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttc 78  Q
    ||||||| |||||||||||||||| |||||  ||||||||| ||||| |||||| ||||||||    
T  42366158 aggtatcagtgcaggatacgcaggggatacagtacatcatctattttgaagtattggagcttc 42366220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 3934843 - 3934896
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtat 69  Q
    |||||||||||| ||||||||||| ||||  |||| ||||||||||||||||||    
T  3934843 aggtatcggtgcgggatacgcaggggatataatacgtcatccattttaaagtat 3934896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 11906278 - 11906226
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcg 71  Q
    |||||||||||||||||||||  |||| |||| ||||||||||| ||||||||    
T  11906278 tatcggtgcaggatacgcagggaatacaatacgtcatccattttgaagtatcg 11906226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 22774614 - 22774562
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcg 71  Q
    ||||||||||||||| ||||| ||||||||||  || ||||||||||||||||    
T  22774614 tatcggtgcaggatatgcaggggatacgatacgccaaccattttaaagtatcg 22774562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 41233440 - 41233388
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatc 70  Q
    |||||| ||||||||||| |||| ||||||||| ||||||||||| |||||||    
T  41233440 gtatcgttgcaggatacgtaggaaatacgatacgtcatccattttgaagtatc 41233388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 17138312 - 17138370
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttc 78  Q
    ||||||||||||||||||||| ||||| |||| ||||| ||||| ||||||||| |||||    
T  17138312 tatcggtgcaggatacgcaggggatac-atacgtcatctattttgaagtatcggggcttc 17138370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 5834893 - 5834825
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||||||| ||||    
T  5834893 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggagcttcacagct 5834825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 5325776 - 5325839
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||    
T  5325776 aggtatcggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatcggggcttca 5325839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 28377059 - 28376996
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||    
T  28377059 aggtatcggtgcaggatacacaggagatacgatacgtcatccattttgaagtatcggggcttca 28376996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 31946262 - 31946323
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||||||||| |||||||    
T  31946262 gtatcggtgcaggatacgcagggaatacgatacgtcatccattttaaagtatcgaagcttca 31946323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 8064164 - 8064227
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  8064164 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 8064227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 40694133 - 40694070
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||| ||||||||| ||||||    
T  40694133 aggtatcggtgcagaatacgcatgggatacgatacatcatccattttgaagtatcggggcttca 40694070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 51858883 - 51858828
Alignment:
Q  28 aggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagc 83  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||    
T  51858883 aggatacgcaggagatacgatacgtcatccattttaaagtatcggggcttgagagc 51858828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 14795084 - 14795018
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| |||||| ||||    
T  14795084 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagct 14795018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 19738760 - 19738698
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttc 78  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| |||||    
T  19738760 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttc 19738698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 38492314 - 38492380
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagag 82  Q
    |||||||||||||||||||||||| |||||  ||| ||||||||||| ||||||||| |||||||||    
T  38492314 aggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttcagag 38492380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 27981956 - 27981893
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagag 82  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||| |||||| ||||    
T  27981956 tatcggtggaggatgcgcaggagatacgatacgtcatccattttgaagtatctgagctttagag 27981893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 47607165 - 47607110
Alignment:
Q  24 gtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||    
T  47607165 gtgcaggatacgcaggagatacgatatgtcatccattttgaagtatcggggcttca 47607110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 52122924 - 52122987
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||  ||| ||||||||||| ||||||||| ||||||    
T  52122924 aggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttca 52122987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 55901196 - 55901250
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    ||||||||||||||||| |||| |||||||||| ||||| |||||||||||||||    
T  55901196 gtatcggtgcaggatacacaggggatacgatacgtcatctattttaaagtatcgg 55901250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 44121897 - 44121950
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtat 69  Q
    ||||||||||||||||||||||| ||||||||||| || |||||||| ||||||    
T  44121897 aggtatcggtgcaggatacgcagaagatacgatacgtcgtccattttgaagtat 44121950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 52721324 - 52721260
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||| |||||| || |||||||||||    
T  52721324 tatcggtgcaggatacgcaggggatacgatacgtcatctattttgaagtattgg-gcttcagagct 52721260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 2586399 - 2586336
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||| |||||| ||||||| |||| |||||| ||| ||||||||||||||||||||| ||||||    
T  2586399 aggtgtcggtgaaggatactcaggggatacggtacgtcatccattttaaagtatcggggcttca 2586336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 10257763 - 10257700
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||| | ||| ||||||||  |||||||||||||||||||||| ||||||||| ||||||    
T  10257763 aggtatcgatacagaatacgcagcggatacgatacatcatccattttgaagtatcggggcttca 10257700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 17892311 - 17892248
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||| | |||||||| |||||||| ||| || |||||||| ||||||||||||||||    
T  17892311 aggtatcggtgtatgatacgcatgagatacggtacgtcgtccattttgaagtatcggagcttca 17892248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 41145675 - 41145612
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||| ||||||||||||||| |||||  ||| ||||||||||| ||||||||| ||||||    
T  41145675 aggtatcgatgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttca 41145612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 52572273 - 52572207
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagag 82  Q
    ||||||||||||| ||| | |||| ||||||  || ||||||||||||||||||||| |||||||||    
T  52572273 aggtatcggtgcatgatgcacaggggatacggaacgtcatccattttaaagtatcggggcttcagag 52572207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 53322399 - 53322337
Alignment:
Q  17 ggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||| ||||||||||||||   |||||||||| ||||||||||| ||||||||| ||||||    
T  53322399 ggtatcagtgcaggatacgcaaaggatacgatacgtcatccattttgaagtatcggggcttca 53322337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 51674919 - 51674858
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||| |||||| ||| |||||||||||||||| ||||| ||||| ||||||||| ||||||    
T  51674919 gtatcagtgcagaatatgcaggagatacgatacgtcatctattttgaagtatcggcgcttca 51674858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 44522035 - 44522095
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||| ||| ||||||||||  |||||||||||||||| ||||| |||| |||||    
T  44522035 tatcggtgcagaatatgcaggagatataatacatcatccattttgaagtaccggaacttca 44522095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 1177044 - 1176981
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||| ||||||||||||| ||| |||||||||| ||| | ||||| ||||||||| ||||||    
T  1177044 aggtatgggtgcaggatacgtaggggatacgatacgtcaactattttgaagtatcggggcttca 1176981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 42472626 - 42472680
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    ||||||||||||||||||||||  ||||  ||| ||||||||||| |||||||||    
T  42472626 gtatcggtgcaggatacgcagggaatacagtacgtcatccattttgaagtatcgg 42472680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 24296559 - 24296498
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||| | |||||||||  |||||| ||| |||||||||||||| |||||||| ||||    
T  24296559 gtatcggtgtatgatacgcagatgatacggtacgtcatccattttaaactatcggagtttca 24296498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 36511991 - 36512052
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||| |||||||||||| | ||||| |||| ||| ||||||| ||||||||| ||||||    
T  36511991 gtatcggcgcaggatacgcacgggatacaatacgtcaaccattttgaagtatcggggcttca 36512052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 3403633 - 3403693
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||| ||||||||||| |||| |||||| ||| ||||||||||| |||||| || ||||||    
T  3403633 tatcagtgcaggatacacaggggatacggtacgtcatccattttgaagtattggggcttca 3403693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 38948792 - 38948732
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  38948792 tatcggtgcaggatacgcaggggatacggtacgtcatccattttaaagtatcggagcttca 38948732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 1043290 - 1043227
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||    
T  1043290 aggtatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcggggcttca 1043227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 20409609 - 20409676
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagc 83  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||||||    
T  20409609 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcagagc 20409676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 37104183 - 37104120
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||    
T  37104183 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttca 37104120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 3426909 - 3426848
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||    
T  3426909 gtatcggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatcggggcttca 3426848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 6916929 - 6916998
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagctg 85  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| |||||| |||||    
T  6916929 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagctg 6916998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 43189718 - 43189662
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||    
T  43189718 aggtatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcgg 43189662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 28949296 - 28949359
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  28949296 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 28949359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 37346903 - 37346966
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  37346903 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 37346966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 38330490 - 38330427
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  38330490 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 38330427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 52895768 - 52895831
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  52895768 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 52895831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 8132244 - 8132183
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||| |||||| ||| ||||| ||||| ||||||||||||||||    
T  8132244 gtatcggtgcaggatacgcaggggatacggtacgtcatctattttgaagtatcggagcttca 8132183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 41676044 - 41676105
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagctt 77  Q
    ||||||||||||| ||||||||||||||||| ||| |||||||||||||| |||||| ||||    
T  41676044 aggtatcggtgcatgatacgcaggagatacggtacgtcatccattttaaaatatcggggctt 41676105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 2223029 - 2223100
Alignment:
Q  11 cagagaggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagag 82  Q
    |||| ||||||||||| ||||||| || || ||||| ||||||||| ||||||||||||| |||||||||||    
T  2223029 cagacaggtatcggtgtaggatacacatgaaatacgttacatcatctattttaaagtatctgagcttcagag 2223100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 2472909 - 2472972
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||| |||||||||||| ||||| |||||||||| ||||| ||||| ||||||||||||||||    
T  2472909 aggtaccggtgcaggatatgcaggggatacgatacgtcatctattttgaagtatcggagcttca 2472972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 9781705 - 9781642
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||| | ||||||    
T  9781705 aggtatcggtgcaggatacgcaggggatacgatacgtcaaccattttgaagtatcagggcttca 9781642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 48715281 - 48715336
Alignment:
Q  17 ggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||| |||||||||    
T  48715281 ggtatcggtgtaggatacgcaggagatacgatacaatatccattttgaagtatcgg 48715336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 1036522 - 1036469
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtat 69  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||    
T  1036522 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtat 1036469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 29168010 - 29167957
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtat 69  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||    
T  29168010 aggtatcggtgcaggatacgcaggggatatgatacgtcatccattttgaagtat 29167957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 14167144 - 14167092
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcg 71  Q
    ||||||||||||||||||||| |||||||||  ||||||||||| ||||||||    
T  14167144 tatcggtgcaggatacgcaggtgatacgataagtcatccattttgaagtatcg 14167092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 34432446 - 34432501
Alignment:
Q  24 gtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||| |||||||||| ||||| |||| ||||||||||| ||||||||||||||||    
T  34432446 gtgcatgatacgcaggggatacaatacgtcatccattttgaagtatcggagcttca 34432501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 36367747 - 36367801
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatc 70  Q
    |||||||||||||||||||||||| |||||  ||| ||||||||||| |||||||    
T  36367747 aggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatc 36367801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 5984288 - 5984228
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttc 78  Q
    |||||||||||| ||||||||| |||||  ||| ||||||||||| ||||||||| |||||    
T  5984288 gtatcggtgcagaatacgcaggggatacagtacgtcatccattttgaagtatcggggcttc 5984228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 33039676 - 33039620
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||||||||||||||||||||| | ||||| |||  | |||||||||||||||||||    
T  33039676 aggtatcggtgcaggatacgcaagggatacaatatgttatccattttaaagtatcgg 33039620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 34096610 - 34096670
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||||| |||||||||| |||  |||||| || |||||| ||||||    
T  34096610 tatcggtgcaggatacgcaggggatacgatacgtcaatcattttgaaatatcggggcttca 34096670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 32381121 - 32381175
Alignment:
Q  23 ggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagctt 77  Q
    |||||| |||| ||||| |||||| || |||||||||||||||||||||| ||||    
T  32381121 ggtgcatgatatgcaggggatacggtatatcatccattttaaagtatcggggctt 32381175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 10822458 - 10822410
Alignment:
Q  23 ggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcg 71  Q
    |||||||||||||||||  ||| ||||| ||||||||||| ||||||||    
T  10822458 ggtgcaggatacgcagggaatatgatacgtcatccattttgaagtatcg 10822410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 13013047 - 13013115
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    ||||||| ||||| ||||| |||| |||||||||  ||||||||||| |||||| || |||||| ||||    
T  13013047 aggtatcagtgcatgatacacaggggatacgatatgtcatccattttgaagtattggggcttcacagct 13013115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 24849412 - 24849364
Alignment:
Q  31 atacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||| |||||| ||| ||||| ||||| ||||||||||||||||    
T  24849412 atacgcaggggatacggtacgtcatctattttgaagtatcggagcttca 24849364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 28659357 - 28659409
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatc 70  Q
    ||||||||||| ||||||||||  ||||  ||| |||||||||||||||||||    
T  28659357 gtatcggtgcatgatacgcagggaataccgtacgtcatccattttaaagtatc 28659409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 31653460 - 31653520
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||| ||||| || | |||||||||||| ||||||||| ||||||| | ||||||    
T  31653460 tatcggtgcatgatacacaagggatacgatacattatccattttgaagtatcagggcttca 31653520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 8147 - 8210
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||    
T  8147 aggtatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcggggcttca 8210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 52684264 - 52684201
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||    
T  52684264 aggtatcggtgcaggatacgcatgagatacgatacgtcatctattttgaagtatcggagcttca 52684201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 10225208 - 10225274
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||| | |||||| ||||    
T  10225208 gtatcggtgcaggatacgcaggggatacgatacgtcatccattttaaagtatcagggcttcacagct 10225274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 1528565 - 1528497
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||| |||| |||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||    
T  1528565 aggtatcgatgcatgatacgcaggggatatgatacgtcatccattttgaagtatcggagcttcagagct 1528497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 6134439 - 6134503
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagag 82  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||||||| | |||||||||    
T  6134439 gtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcagggcttcagag 6134503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 7327775 - 7327707
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| |||||| ||||    
T  7327775 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagct 7327707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 13353244 - 13353296
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcg 71  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  13353244 tatcggcgcaggatacgcaggagatacgatacgtcatccattttaaagtatcg 13353296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 37996866 - 37996934
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||||| |||||| ||||    
T  37996866 aggtctcggtgcaggatacgcaggggatacggtacgtcatccattttaaagtatcggggcttcacagct 37996934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 35389813 - 35389750
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  35389813 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 35389750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 55269067 - 55269130
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||    
T  55269067 aggtatcgatgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttca 55269130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 2567444 - 2567498
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  2567444 gtatcggtgcaggatacgcaggaaatacgatacgtcatccattttgaagtatcgg 2567498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 25937121 - 25937175
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  25937121 gtattggtgtaggatacgcaggagatacgatacgtcatccattttaaagtatcgg 25937175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 40497391 - 40497330
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  40497391 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 40497330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 19349645 - 19349709
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcag 80  Q
    ||||||| ||||||| ||| ||||||||||||||| ||| ||||||| |||||||||||||||||    
T  19349645 aggtatcagtgcaggttacacaggagatacgatacgtcaaccattttgaagtatcggagcttcag 19349709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 19420961 - 19420905
Alignment:
Q  23 ggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||    
T  19420961 ggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttca 19420905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 28882736 - 28882796
Alignment:
Q  19 tatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||| |||||||||| |||||| ||| ||||||||||| ||||||||||||||||    
T  28882736 tatcggtgcatgatacgcaggggatacggtacgtcatccattttgaagtatcggagcttca 28882796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 48122886 - 48122822
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagag 82  Q
    |||||||||||||||| ||||| |||||| ||| ||||||||||| ||||||||| |||||||||    
T  48122886 gtatcggtgcaggatatgcaggggatacggtacgtcatccattttgaagtatcggggcttcagag 48122822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 52121235 - 52121175
Alignment:
Q  24 gtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||| ||||    
T  52121235 gtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggggcttcacagct 52121175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 53192561 - 53192493
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    ||||||||||||||||||| ||||  ||||| ||| ||||||||||| ||||||||| |||||||||||    
T  53192561 aggtatcggtgcaggatactcagggtatacggtacgtcatccattttgaagtatcggggcttcagagct 53192493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 13748502 - 13748565
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||  |||||||||| ||| ||||||| ||||||||| ||||||    
T  13748502 aggtatcggtgcaggatacgcagaggatacgatacgtcaaccattttgaagtatcggggcttca 13748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 22289776 - 22289831
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcg 71  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  22289776 aggtattggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcg 22289831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 22611429 - 22611492
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||| ||||||| |||||| ||| ||||||||||| ||||||||| ||||||    
T  22611429 aggtatcggtgcaggaaacgcaggggatacggtacgtcatccattttgaagtatcggggcttca 22611492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 28704790 - 28704727
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||| |||||||||| ||||| |||||| ||| ||||||||||||||||||||| ||||||    
T  28704790 aggtatcagtgcaggatatgcaggggatacggtacgtcatccattttaaagtatcggggcttca 28704727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 52505889 - 52505950
Alignment:
Q  17 ggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||| ||||||||| ||||||    
T  52505889 ggtatcggtgcaggatacgcagg-gatacagtacatcatccatttttaagtatcggggcttca 52505950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 19879148 - 19879201
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtat 69  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||||||    
T  19879148 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtat 19879201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 29915929 - 29915868
Alignment:
Q  11 cagagaggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||| ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||||||||    
T  29915929 cagacaggtatcggtgcatgatacgcaggggatacgatacgtcatctattttgaagtatcgg 29915868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 29965082 - 29965021
Alignment:
Q  11 cagagaggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcgg 72  Q
    |||| ||||||||||||| |||||||||| |||||||||| ||||| ||||| |||||||||    
T  29965082 cagacaggtatcggtgcatgatacgcaggggatacgatacgtcatctattttgaagtatcgg 29965021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 22310768 - 22310705
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||| |||| |||||| ||| ||||||||| | ||||||||| ||||||    
T  22310768 aggtatcggtgcaggatacacaggggatacggtacgtcatccattgtgaagtatcggggcttca 22310705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 41742127 - 41742190
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||||||||||| |||  ||||| |||| ||||||||||| ||||||||| ||||||    
T  41742127 aggtatcggtgcaggatacacagaggatacaatacgtcatccattttgaagtatcggcgcttca 41742190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 42229737 - 42229674
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||| ||||  |||| ||||| ||||| |||||| |||||||||    
T  42229737 aggtatcggtgcaggatacgcaggggatataatacgtcatctattttgaagtattggagcttca 42229674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 42464962 - 42465025
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||||  |||||  ||| ||||||||||| ||||||||| ||||||    
T  42464962 aggtatcggtgcaggatacgcagaggatacagtacgtcatccattttgaagtatcggggcttca 42465025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 30226483 - 30226430
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtat 69  Q
    |||||||||||||||||||||||  |||||||||  ||||||||||| ||||||    
T  30226483 aggtatcggtgcaggatacgcagaggatacgataagtcatccattttgaagtat 30226430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 30787619 - 30787680
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||| || ||||||||||||| |||||||||| ||||| ||||| ||||||||| ||||||    
T  30787619 gtatcagtacaggatacgcaggggatacgatacgtcatcgattttgaagtatcggggcttca 30787680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 47642078 - 47642025
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcg 71  Q
    |||||||||||||||||||| | |||||| ||| ||||||||||| ||||||||    
T  47642078 gtatcggtgcaggatacgcatgggatacggtacgtcatccattttgaagtatcg 47642025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 49419298 - 49419245
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtat 69  Q
    |||||||| ||||||||||||| | |||||||||| ||||||||||| ||||||    
T  49419298 aggtatcgatgcaggatacgcaagggatacgatacgtcatccattttgaagtat 49419245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 1679753 - 1679816
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||| ||||  |||||| ||| | ||||||||| ||||||||| ||||||    
T  1679753 aggtatcggtgcaggatatgcagtggatacggtacgttatccattttgaagtatcggggcttca 1679816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 2122768 - 2122704
Alignment:
Q  18 gtatcggtgcaggatacgcaggag---atacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||| ||||||||||||   |||| |||| ||||||||||| ||||||||| ||||||    
T  2122768 gtatcggtgcatgatacgcaggaggggatacaatacgtcatccattttgaagtatcggggcttca 2122704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 25700823 - 25700779
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccatt 60  Q
    |||||||||||||||||||||||  ||||| ||| ||||||||||    
T  25700823 aggtatcggtgcaggatacgcagaggatacaatatatcatccatt 25700779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 44647 - 44713
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||| |||||| ||||    
T  44647 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagct 44713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 27836 - 27904
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||||||||| ||||| |||||| ||| ||||||||||| ||||||||| |||||| ||||    
T  27836 aggtatcggtgcaggatatgcaggggatacggtacgtcatccattttgaagtatcggggcttcacagct 27904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 5575 - 5514
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagctt 77  Q
    |||||||||||||||||||||||| |||||| ||| || |||||||| ||||||||| ||||    
T  5575 aggtatcggtgcaggatacgcaggggatacggtacgtcgtccattttgaagtatcggggctt 5514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 10661 - 10600
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||| |||||||||| |||| | ||||||||||||||||||||||| | ||||||    
T  10661 gtatcggtgcatgatacgcaggggatatggtacatcatccattttaaagtatctgggcttca 10600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 42122 - 42183
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    |||||||||||||||||||||| |||||  ||| ||||||||||| ||||||||| ||||||    
T  42122 gtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcggggcttca 42183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 30499 - 30562
Alignment:
Q  16 aggtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttca 79  Q
    ||||||||||| ||||||||||||| ||||| ||| | ||||||||| ||||||||| ||||||    
T  30499 aggtatcggtgtaggatacgcaggaaatacggtacgttatccattttgaagtatcggggcttca 30562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 25587 - 25653
Alignment:
Q  18 gtatcggtgcaggatacgcaggagatacgatacatcatccattttaaagtatcggagcttcagagct 84  Q
    |||||||||||| ||||||||| |||||| | | ||||||||||| ||||||||| |||||| ||||    
T  25587 gtatcggtgcagaatacgcaggggatacggtgcgtcatccattttgaagtatcggggcttcacagct 25653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University