View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_12 (Length: 437)
Name: NF11740_low_12
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 117 - 424
Target Start/End: Original strand, 16288817 - 16289122
Alignment:
| Q |
117 |
ctaacttattggcattgtcaaatttctgagcttaattcagttggcaggaacaatgcacatagttcggggttcaaattctccgaccaccaaaaaaa-tccg |
215 |
Q |
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| T |
16288817 |
ctaacttattg-ctttgtcaaatttctgagcttaactcagttggtaggaacaatgcacatgatccagggttcaaactctccgaccacaaaaaaaaatccg |
16288915 |
T |
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| Q |
216 |
ataacattcataatcagaaactatnnnnnnnnnnnnnctaaacaaatacgaattcagtaacattcacatcatcgtaatagacatttcttcaatggattta |
315 |
Q |
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| T |
16288916 |
ataacattcataattagaaactataaaaaaaaaaa--ctaaacaaatacaaattcagtaacattcacatcatcgtaatagacatttctttagtggattta |
16289013 |
T |
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| Q |
316 |
taaataaacaaaaaagaacaattccatcaacagttctgtcttttgtataacaatttccctatatcattcctatagtatatacctaaggaaaacaatcaat |
415 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16289014 |
taaataaacaaaaaagaacaattccatcaacagttttgtcttttgtataacaatttccctatatcattcctatagtatatacctaaggaaaacaatcaat |
16289113 |
T |
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| Q |
416 |
gtccttgtt |
424 |
Q |
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||||||||| |
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| T |
16289114 |
gtccttgtt |
16289122 |
T |
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