View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_15 (Length: 420)
Name: NF11740_low_15
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 405
Target Start/End: Original strand, 9715429 - 9715819
Alignment:
| Q |
15 |
atcaactcatgaaagcattgtgtcattcgcaaacacgtgcgagggaagcagaggagttagcaaaacaggcttatgccgacaaagagcgcattattgcact |
114 |
Q |
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| T |
9715429 |
atcaactaatggaagcattgtgtcattcgcaaacgcgtgcgagggaagcagaggagttagcaaaacaggcttatgccgacaaagagcgcattattgcact |
9715528 |
T |
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| Q |
115 |
cttttttatacaagcttcacaactttacgcatacaaacaatggtgtagattgttacatttggaaacactaaagcataagccggtttctactttcattccc |
214 |
Q |
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| T |
9715529 |
cttttttatacaagcttcacaactttacgcatacaaacaatggtgtagattgttacatttggaaacactaaagcataagccggtttctactttcattccc |
9715628 |
T |
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| Q |
215 |
gagactcctccttggatgtcgtttgaaggtaagaaaccaacaacgagaaagcgaaaatttgttaatgacaaacaagaaaaactaggcaagttaaaaagtg |
314 |
Q |
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| T |
9715629 |
gagactcctccttggatgtcgtttgaaggtaagaaaccaacgacgagaaagcgaaaatttgttaatcacaaacaagaaaagctaggcaagttaaaaagtg |
9715728 |
T |
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| Q |
315 |
atctatccacaacatatgatgctgcattttctattggattcagccttgttggagctggcttacttttaggatggactgttggttggatgtt |
405 |
Q |
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| T |
9715729 |
atctatccacaacatatgatgctgcattttctattggattaagccttgttggagctggcttacttttaggatggactgttggttggatgtt |
9715819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 48876966 - 48876855
Alignment:
| Q |
29 |
gcattgtgtcattcgcaaacacgtgcgagggaagcagaggagttagcaaaacaggcttatgccgacaaagagcgcattattgcactcttttttatacaag |
128 |
Q |
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| T |
48876966 |
gcattatgtcactctcaaacacgcgcaagggaagcagaggaagcagcaaaacaagcttatgcagagagagagcacattcttacacttatttttaaacagg |
48876867 |
T |
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| Q |
129 |
cttcacaacttt |
140 |
Q |
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|||||||||||| |
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| T |
48876866 |
cttcacaacttt |
48876855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 48876630 - 48876576
Alignment:
| Q |
350 |
ggattcagccttgttggagctggcttacttttaggatggactgttggttggatgt |
404 |
Q |
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| T |
48876630 |
ggattaagtcttgttggagcaggcttgctattaggatggactgtgggttggatgt |
48876576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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