View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_17 (Length: 413)
Name: NF11740_low_17
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 212 - 322
Target Start/End: Complemental strand, 2694518 - 2694408
Alignment:
| Q |
212 |
aatttcactttgtacaactgttataaataagtagaaacaattgtacatactggatttgtacaagtccatagataaatcaaacatatggacatagattcca |
311 |
Q |
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| T |
2694518 |
aatttcactttgtacaactgttattaaaaagtagaaacaattgtacatactggatttgtacaagtccatagataaattaaacatatggacatagattcct |
2694419 |
T |
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| Q |
312 |
gatattattta |
322 |
Q |
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| T |
2694418 |
gatattattta |
2694408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 139 - 283
Target Start/End: Complemental strand, 655966 - 655816
Alignment:
| Q |
139 |
atatcataaatattgccatgattttcaaggtaacaaatatagtaaaaaccatta-----attgtaatgaacatata-taaatttcactttgtacaactgt |
232 |
Q |
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| T |
655966 |
atatcataaatattgcaatgattttcaaggtaacgaatatggtaaa--ccattactctaattgtaattaacgtaaaataaatttcactttctacaactgt |
655869 |
T |
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| Q |
233 |
tataaataa--gtagaaacaattgtacatactggatttgtacaagtccataga |
283 |
Q |
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| T |
655868 |
tataaaaaaaagtagaaacaattgtaagaactggatttgtacaagtccataga |
655816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2694592 - 2694533
Alignment:
| Q |
1 |
ggaacctccttctcttttatatattccattctagaaaagagtgagcgagattgaacaacaa |
61 |
Q |
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| T |
2694592 |
ggaacctcct-ctcttttatatattccattctaaaaaagagtgagtgagattgaactacaa |
2694533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 656080 - 655988
Alignment:
| Q |
1 |
ggaacctccttctcttttatatattccattctagaaaagagtgagcgagattgaacaacaactg-catgatgctacacgaagtttaccattcaacaagct |
99 |
Q |
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|||||||||| |||||| |||||||||||||||||| ||| ||||||||||||||| || |||||||||||| ||||||| |||| |||||||| |
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| T |
656080 |
ggaacctcct-ctctttaatatattccattctagaa------gagtgagattgaacaacaattgacatgatgctacatcaagtttatcattgaacaagct |
655988 |
T |
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