View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_19 (Length: 401)
Name: NF11740_low_19
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 43699196 - 43699561
Alignment:
| Q |
15 |
atgaagcagtgaacgggagtgcttggtccgagttgcgaataactgtaacaccaggccaattcactctaccatcagtgttagatccaggtccaacattctc |
114 |
Q |
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| T |
43699196 |
atgaagcagtgaacgggagtgcttggtccgagttgcgaataactttaacaccaggccaattcactctaccatcagtgttagatccaggtccaacattctc |
43699295 |
T |
|
| Q |
115 |
aaactccacataagtaaccttatcattgggttgtccctccatctgttcccaacctctagtatccacaaaggaatctatgaaacattgcaatatagccact |
214 |
Q |
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| T |
43699296 |
aaactccacataagtaaccttatcattgggttgtccctccatctgttcccaacctctagtatccacaaaggaatctatgaaacattgcaatatagccact |
43699395 |
T |
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| Q |
215 |
gtggaatatgccctccaaggacgacccaatgttccacgcacctctgattttctgccttcatcttcaggtgacatggtgaaattacaatgttggaatgtga |
314 |
Q |
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| T |
43699396 |
gtggaatatgccctccaaggacgacccaatgttccacgcacctctgattttttgccttcatcttcaggtgacatggtgaaattacaatgttggaatgtga |
43699495 |
T |
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| Q |
315 |
aacctgttttttcagatggatttccacgtgactgagcggtgaataccacaaactgccgatagcgtg |
380 |
Q |
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| T |
43699496 |
aacctgttttttcagatggatttccacgtgattgtgcggtgaataccacgaactgtcgatagcgtg |
43699561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 45514000 - 45514363
Alignment:
| Q |
17 |
gaagcagtgaacgggagtgcttggtccgagttgcgaataactgtaacaccaggccaattcactctaccatcagtgttagatccaggtccaacattctcaa |
116 |
Q |
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| T |
45514000 |
gaagcagtgaaagggagtgctttgtttgggttgcgaagaactgtaacacctggccaatccactctaccatcagtgtttgatccaggtccaacattctcaa |
45514099 |
T |
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| Q |
117 |
actccacataagtaaccttatcattgggttgtccctccatctgttcccaacctctagtatccacaaaggaatctatgaaacattgcaatatagccactgt |
216 |
Q |
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|||| ||||||||||| |||||| ||| | || |||| |||||||||||| | ||| || | |||||||||||||| ||||||||||| ||||| |
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| T |
45514100 |
actcaacataagtaactttatcagtggccagacctgacatcccttcccaacctcttggatcaaccattgaatctatgaaacaatgcaatatagcaactgt |
45514199 |
T |
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| Q |
217 |
ggaatatgccctccaaggacgacccaatgttccacgcacctctgattttctgccttcatcttcaggtgacatggtgaaattacaatgttggaatgtgaaa |
316 |
Q |
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| T |
45514200 |
tgaatatgccctccaaggacgacctaatgttgcatgcacctctgactttctcttctcatcttcaggtgacattgtgaatttacaacgttggaatgtgaaa |
45514299 |
T |
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| Q |
317 |
cctgttttttcagatggatttccacgtgactgagcggtgaataccacaaactgccgatagcgtg |
380 |
Q |
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|||||||||||| ||||| || |||||||||| ||||||||| ||||||||| | |||||||| |
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| T |
45514300 |
cctgttttttcatatggactttcacgtgactgtgcggtgaatgtcacaaactgtctatagcgtg |
45514363 |
T |
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