View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_23 (Length: 358)
Name: NF11740_low_23
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 9352344 - 9352694
Alignment:
| Q |
1 |
ttatgctatgttttgtttggtgatttcgattttattgtattgtaggtcgcttttatgcttttgagaaagctcacaggttggactgtacttcaagtggctg |
100 |
Q |
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| T |
9352344 |
ttatgctatgttttgtttggtgatttcgattttattgtattgtaggtcgcttttatgcttttgagaaagctcacaggttggactgtacttcaagtggctg |
9352443 |
T |
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| Q |
101 |
tggtgttcgccaattcaaatcctcctttctacaacaccttgaaagagtaacatccttcttctgattattttcattttcaatgttaaatagtagcgcgtac |
200 |
Q |
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| T |
9352444 |
tggtgttcgccaattcaaatccgcctttctacaacaccttgaaagagtaacatccttcttctgattattttccttttcagtgttaaatagtggcgcgtac |
9352543 |
T |
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| Q |
201 |
tggaatttgaacaaatggctattgttccgcgatatgtgatcgacaaactgctattttccttttacaccttttgttcaatagcgcctatggtggtgctggt |
300 |
Q |
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| T |
9352544 |
tggaatttgaacaaatggctattgttccgcgatatgtgatcgacaaactgctattttccttttacgccttttgatcaatagcgccgatggtggtgctggt |
9352643 |
T |
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| Q |
301 |
gctacaacattgttgtgtaataaaatttgaacaaactgctattctctgcta |
351 |
Q |
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| T |
9352644 |
gctataacattgttgtgtattaaaatttgaacaaactgctattttctgcta |
9352694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 650303 - 650454
Alignment:
| Q |
9 |
tgttttgtttggtgatttcgattttattgtattgtaggtcgcttttatgcttttgagaaagctcaca-ggttggactgtacttcaagtggctgtggtgtt |
107 |
Q |
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| T |
650303 |
tgttgtgtttggtgatctcgatattattgcattgtaggtggcttttacgcctttgagaaagctcataaggtttgatcctacttcaagtggtcatggtgtt |
650402 |
T |
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| Q |
108 |
cgccaattcaaatcctcctttctacaacaccttgaaagagtaacatccttct |
159 |
Q |
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| T |
650403 |
cgccaattcaagactgcctttcttcaacgccttgaaagagtaacatccttct |
650454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 426594 - 426515
Alignment:
| Q |
40 |
ttgtaggtcgcttttatgcttttgagaaagctcacaggttggactgtacttcaagtggctgtggtgttcgccaattcaaa |
119 |
Q |
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| T |
426594 |
ttgtaggtcgattttatgcttttgagaaagctcataggttagatcctacttctagtggtcgtggtgttcgtcaattcaaa |
426515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 46766698 - 46766727
Alignment:
| Q |
207 |
ttgaacaaatggctattgttccgcgatatg |
236 |
Q |
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| T |
46766698 |
ttgaacaaatggctattgttccgcgatatg |
46766727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 52596578 - 52596659
Alignment:
| Q |
38 |
tattgtaggtcgcttttatgcttttgagaaagctcacaggttggactgtacttcaagtggctgtggtgttcgccaattcaaa |
119 |
Q |
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| T |
52596578 |
tattgtaggccggttttatgcttttgagaaagctcataggttggaccccacttcaagtggtcgtggtgttcgtcaattcaaa |
52596659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 25100457 - 25100491
Alignment:
| Q |
203 |
gaatttgaacaaatggctattgttccgcgatatgt |
237 |
Q |
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| T |
25100457 |
gaatttgaacaaattgctattgttccgcgatatgt |
25100491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 9635010 - 9634982
Alignment:
| Q |
202 |
ggaatttgaacaaatggctattgttccgc |
230 |
Q |
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| T |
9635010 |
ggaatttgaacaaatggctattgttccgc |
9634982 |
T |
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