View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_25 (Length: 355)
Name: NF11740_low_25
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 179 - 336
Target Start/End: Complemental strand, 3300173 - 3300016
Alignment:
| Q |
179 |
aggaaagtaaatggaagggtgaggtgaaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagcacacataacctgtt |
278 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3300173 |
aggaaagtaaatgaaagggtgaggtgaaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagcacacataacttgtt |
3300074 |
T |
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| Q |
279 |
ctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaa |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3300073 |
ctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaa |
3300016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 179 - 336
Target Start/End: Complemental strand, 3393066 - 3392909
Alignment:
| Q |
179 |
aggaaagtaaatggaagggtgaggtgaaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagcacacataacctgtt |
278 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3393066 |
aggaaagtaaatgaaagggtgaggtgaaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagcacacataacttgtt |
3392967 |
T |
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| Q |
279 |
ctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaa |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3392966 |
ctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaa |
3392909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 1163160 - 1163288
Alignment:
| Q |
205 |
aaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagcac---------acataacctgttctaataaacataaatat |
295 |
Q |
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| T |
1163160 |
aaatggtgaaaggaactttatatgccgaatataat----gacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatat |
1163255 |
T |
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| Q |
296 |
caaacagaaattgcaaattgcaacagagtaagt |
328 |
Q |
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| T |
1163256 |
caaacagaaattgcaaattgcaacaaagtaagt |
1163288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 1850443 - 1850382
Alignment:
| Q |
275 |
tgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaa |
336 |
Q |
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| T |
1850443 |
tgttctaataaacataaatatcaaacagaaattgtaaattgcaacaaagtaagtgaaaagaa |
1850382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 39880521 - 39880463
Alignment:
| Q |
179 |
aggaaagtaaatggaagggtgaggtgaaatggtgaaaggtactttatatgccgaatata |
237 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
39880521 |
aggaaagtaaatggtagggtgaggtgaaatggtgaaagtaactttttatgccgaatata |
39880463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 38988282 - 38988229
Alignment:
| Q |
281 |
aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaag |
334 |
Q |
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|||||||||||||||||||||||||||||||| |||| || ||||||||||| |
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| T |
38988282 |
aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaag |
38988229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 39880405 - 39880352
Alignment:
| Q |
281 |
aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaag |
334 |
Q |
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|||||||||||||||||||||||||||||||| |||| || ||||||||||| |
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| T |
39880405 |
aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaag |
39880352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 40418860 - 40418807
Alignment:
| Q |
281 |
aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaag |
334 |
Q |
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|
|||||||||||||||||||||||||||||||| |||| || ||||||||||| |
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| T |
40418860 |
aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaag |
40418807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 40418952 - 40418893
Alignment:
| Q |
203 |
tgaaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagcac |
266 |
Q |
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||||||||||||||| ||||| ||||||||||| |||||||| |||||||||| ||||||| |
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| T |
40418952 |
tgaaatggtgaaaggaactttttatgccgaata----taatgacaggcatggtttgtgaagcac |
40418893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 25911669 - 25911751
Alignment:
| Q |
179 |
aggaaagtaaatggaagggtgaggtgaaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagca |
265 |
Q |
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|||||||||||||| ||||||||||||||| |||||||| | ||| ||||||||||| |||||||| |||||||||||||||| |
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| T |
25911669 |
aggaaagtaaatggtagggtgaggtgaaatagtgaaaggaattttttatgccgaata----taatgacagacatggtttgggaagca |
25911751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 25911785 - 25911821
Alignment:
| Q |
281 |
aataaacataaatatcaaacagaaattgcaaattgca |
317 |
Q |
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||||||||||| |||||||||||||||||||| |||| |
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| T |
25911785 |
aataaacataagtatcaaacagaaattgcaaactgca |
25911821 |
T |
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