View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_26 (Length: 354)
Name: NF11740_low_26
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_26 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 46677159 - 46676819
Alignment:
| Q |
18 |
cacattgctggtgaagatttctgtcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46677159 |
cacattgctggtgaagatttctgtcagagtacccccaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccatt |
46677060 |
T |
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| Q |
118 |
attattattataccttagtttttaactttcttcattagcctaacaccaaagtttgtaactggggaaggagggtcatgcataaactgcaactgtaagaaat |
217 |
Q |
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| T |
46677059 |
attattattataccttagtttttaactttcttcattagcctaacaccaaagtttgtaactggggaaggagggtcatgcagaaactgcaactgtaagaaat |
46676960 |
T |
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| Q |
218 |
caaagtgtatgaaaatgtaagttctaaagcatgctcctttggttttatgc----ttagtgtgtcctttttcagttcaattttgtcaattataattgaatt |
313 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46676959 |
caaagtgtatgaaactgtaagttctaaagcatgctcctttggttttatgcttaattagtgtgtcctttttcagttcaattttgtcaattataattgaatt |
46676860 |
T |
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| Q |
314 |
cataagttattgcgagggacgataatttgggcttaatgact |
354 |
Q |
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| T |
46676859 |
cataagttattgcgagggacaataatttgggcttaatgact |
46676819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 46703694 - 46703563
Alignment:
| Q |
33 |
gatttctgtcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattatacct |
132 |
Q |
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| T |
46703694 |
gatttttgtcagagtatccgcaaaaggaagaggaaagtgtagttgttgatcatcgattcctctgctctataatccttattccattattat------atgt |
46703601 |
T |
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| Q |
133 |
tagtttttaactttcttcattagcctaacaccaaagtt |
170 |
Q |
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| T |
46703600 |
tagtttttaactttcttcattagcctaacaccaaagtt |
46703563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 46685671 - 46685544
Alignment:
| Q |
32 |
agatttctgtcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattattattattatacc |
131 |
Q |
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| T |
46685671 |
agatttatgtcagagtatcccacaaaggaaaaggaaagt--agtttttgattgtcgattccactgcttgataatctttattccatta------ttatatg |
46685580 |
T |
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| Q |
132 |
ttagtttttaactttcttcattagcctaacaccaaa |
167 |
Q |
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| T |
46685579 |
ttagtttttaactttcttcattaacctaacaccaaa |
46685544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 177 - 292
Target Start/End: Complemental strand, 46680566 - 46680451
Alignment:
| Q |
177 |
tggggaaggagggtcatgcataaactgcaactgtaagaaatcaaagtgtatgaaaatgtaagttctaaagcatgctcctttggttttatgcttagtgtgt |
276 |
Q |
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|||||||| |||| |||||| ||||||| |||||||||||| ||||| ||||| ||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
46680566 |
tggggaagaagggacatgcaaaaactgccactgtaagaaattggagtgtttgaaactgtaagttctaaaacacgctcctttatttttatgcttagtgtgt |
46680467 |
T |
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| Q |
277 |
cctttttcagttcaat |
292 |
Q |
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| T |
46680466 |
tctctctcagttcaat |
46680451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 46703874 - 46703832
Alignment:
| Q |
18 |
cacattgctggtgaagatttctgtcagagtacccctaaaagga |
60 |
Q |
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| T |
46703874 |
cacattcctggtgaagatttctgtcagagtactcccaaaagga |
46703832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 21728354 - 21728211
Alignment:
| Q |
20 |
cattgctggtgaagatttctgtcagagtacccctaaaaggaagaggaaagtgtagttttttattatcgattccacagcttgataatctttattccattat |
119 |
Q |
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|||||| ||||||||||| ||||||| | |||| ||||||||||| ||| |||||| || ||||| ||||| | ||| ||||||||||||||||| |
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| T |
21728354 |
cattgccggtgaagatttatgtcagactgcccccaaaaggaagagaaaatggtagttattgattattgattcttcttctttataatctttattccatt-- |
21728257 |
T |
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| Q |
120 |
tattattataccttagtttttaactttcttcattagcctaacaccaaagt |
169 |
Q |
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| T |
21728256 |
----attacatgttagtttttaactttcttcattggcctaacaccgaagt |
21728211 |
T |
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