View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_29 (Length: 308)
Name: NF11740_low_29
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 37095360 - 37095648
Alignment:
| Q |
8 |
caatgaacaaggtgatgaggacggttgaggtttgatttttgccatgagcataatactaacaatattaatatggatcatttcaagaagaaaaattaaacca |
107 |
Q |
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| T |
37095360 |
caatgaacaaggtgatgaggacggttgaggtttgatatttgctatgaccataatactaacaatattaatatggatcatttcaagaagaaaaattaaacaa |
37095459 |
T |
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| Q |
108 |
aataat----actctatttccatgatcaaatgcaaacgtatccaaagttgtgaggttctagatctcaagaatatggttattgttgtgagtcaaagataca |
203 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
37095460 |
tataatcactactctatttccatgatcaaatgcaaacgtatccaaagttgtgaggttctagatctcaagaatatggt-attgttgtgagtcaaagaaaca |
37095558 |
T |
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| Q |
204 |
cttgaatgtgagagtcacacacttcgtcacctcatttaccacaagagcaacgaatctgtcagaatccagaacaaaaatcacaaacatttt |
293 |
Q |
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| T |
37095559 |
catgaatgtgagagtcacacacttcgtcacctcatttaccacaagagcaacgaatctgtcagaatccagaacaaaaatcacaaacatttt |
37095648 |
T |
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