View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_3 (Length: 888)
Name: NF11740_low_3
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 727; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 21 - 878
Target Start/End: Complemental strand, 41709859 - 41709018
Alignment:
| Q |
21 |
cggtggtggtaatttttcaggtggactagtgcttttgggtattcttggtgtcctagacattcttaaagacattgagagtgaaattcaacgcaaagtcaaa |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41709859 |
cggtggtggtaatttttcaggtggactagtgcttttgggtattcttggtgtcctagacattcttaaagacattgagagtgaaattcaacgcaaagtcaaa |
41709760 |
T |
|
| Q |
121 |
gatagcagatttgatcaagcttgataatggcagtgaaattacttgatagcttatatacattttatcnnnnnnntggacagttaaacttagttatcgattc |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41709759 |
gatagcagatttgatcaagcttgataatggcagtgaaattacttgatagcttatatacattttatcaaaaaaatggacagttaaacttagttatcgattc |
41709660 |
T |
|
| Q |
221 |
agcttatgataaaaggggtgatatatggttttaaataatgagatgtgtnnnnnnncaaatgcctgatcgttatcctaaatggaatgaacttacaatcatg |
320 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
41709659 |
agcttatgataaaaggggtgatatatggttttaaataatgagatgtgtaaaaaaccaaatgcccgatcgttatcctaaatggaatgaacttacaatgatg |
41709560 |
T |
|
| Q |
321 |
gaattcgatcatcatattatagattagttcctaatcttagcccactccactgagcagatctactcattgctatagtgaaattttgtattcgttatattgg |
420 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41709559 |
gaattcgatcatcaaattatagattagttcctaatcttagcccactccactgagcagatctactcattgctatagtgaaattttgtattcgatatattgg |
41709460 |
T |
|
| Q |
421 |
tgtcggaaccgcagaaaattgtaacacgggcatctgatattggacaagcacgtcatacaagcgttcagttttctatactgaacacgaaatgggtccagtt |
520 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41709459 |
tgtcggaactgcagaaaattgtaacacgggcatctgatattggacaagcacgtcatacaagcgttcagttttctatactgaacacgatatgggtccagtt |
41709360 |
T |
|
| Q |
521 |
ttctacactgatatgggtgctgtcaaaatgttgacaagtgaactaagtttaataatagtggtagtacttgtcagtttttcttaataaacaagccacctta |
620 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
41709359 |
ttctacactaatatgggtgctgtcaaaatgttgacaagtgaactaagtttaataatagtggtagtacttgtcagtttttcttaatacacaagccacctta |
41709260 |
T |
|
| Q |
621 |
aagtgtctatacactctcaatttctaagcacattgcagcctgtgttataagaaacatggggcataactattgaagaaaacaataatctgctttaaactgt |
720 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41709259 |
aagtgtctatacactctcaatttctaagcacattgcagcctgtgttataagaaacatggggcataactattgaagaaaacaataatctgctttaaattgt |
41709160 |
T |
|
| Q |
721 |
gttgcattttaagctatctccagaatcttctgctcctgcagaagaaattaactttgaggaaaactggattaaaatcaatcattgcatctgtctcagtcat |
820 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41709159 |
gttgcattttaagctatctcca----------------cagaagaaattaactttgaggaaaactggattaaaatcaatcattgcatctgtctcagtcat |
41709076 |
T |
|
| Q |
821 |
attgaattacatcactggaaatttatcattgcgaatattatttaaaacgccatctgtg |
878 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41709075 |
attgaattacatcactggaaatttatcattgcgaatattatttaaaacgccatctgtg |
41709018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 22 - 496
Target Start/End: Original strand, 14111195 - 14111682
Alignment:
| Q |
22 |
ggtggtggtaatttttcaggtggactagtgcttttgggtattcttggtgtcctagacattcttaaagacattgagagtgaaattcaacgcaaagtcaaag |
121 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14111195 |
ggtggtggtaatttttctggtggactagtgcttttgggtattcttggtgtcctagacattcttaaagacattgagggtgaaattcaacgcaaagtcaaag |
14111294 |
T |
|
| Q |
122 |
atagcagatttgatcaagcttgataatggcagtgaaattacttgatagcttatatacattttatcnnnnnnntggacagttaaacttagttatcgattca |
221 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
14111295 |
ataccagatttgatcaagcttgataatggcagtgaaattacttgatagcatatatacattttaccaaaaaaatggacagttaaacttagttatcgattca |
14111394 |
T |
|
| Q |
222 |
gcttatgataaaaggggtgatatatggttttaaataatgagatgtgtnnnnnnncaaatgcctgatcgttatcctaaatggaatgaacttacaatcatgg |
321 |
Q |
| |
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|||||||| |||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||||||||||| |
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| T |
14111395 |
gcttatgacaaaaggtgtgatgtatggttttaaataatgagatgtgtaaaaaaacaaatgcctgttcgttatcctaaatattattaacttacaatcatgg |
14111494 |
T |
|
| Q |
322 |
aattcgatcatcatattatagattagttcctaatcttagcccactccact-------------gagcagatctactcattgctatagtgaaattttgtat |
408 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||||||||||||| | ||||| |||||||||| ||||||||||||||||||| |
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| T |
14111495 |
aattcgatcatcatattataaatgagttcataatcttagcccactccagtcccattttgggtggagcaaatctactcatacctatagtgaaattttgtat |
14111594 |
T |
|
| Q |
409 |
tcgttatattggtgtcggaaccgcagaaaattgtaacacgggcatctgatattggacaagcacgtcatacaagcgttcagttttctat |
496 |
Q |
| |
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| ||| |||||| ||||||||| || ||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
14111595 |
ttgttgtattggggtcggaacctcataaaattgtaacacaggcatctgatattggataagcacatcatacaagcgttcagttttctat |
14111682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 798 - 875
Target Start/End: Original strand, 14112421 - 14112498
Alignment:
| Q |
798 |
atcattgcatctgtctcagtcatattgaattacatcactggaaatttatcattgcgaatattatttaaaacgccatct |
875 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
14112421 |
atcattgcatctgtcttagtcatattgaattacatcactggaaatttatcattgcgaatactatttaaaacgcaatct |
14112498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 720 - 771
Target Start/End: Original strand, 14111755 - 14111806
Alignment:
| Q |
720 |
tgttgcattttaagctatctccagaatcttctgctcctgcagaagaaattaa |
771 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||||| |||||||| |||| |
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| T |
14111755 |
tgttgcattttaagctatctccataatcttttgctcctccagaagaagttaa |
14111806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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