View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11740_low_30 (Length: 303)
Name: NF11740_low_30
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_30 |
 | |
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| [»] chr5 (15 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 303
Target Start/End: Original strand, 37532111 - 37532409
Alignment:
| Q |
5 |
gactgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaa |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
37532111 |
gactgagaggaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgacttaaa |
37532210 |
T |
|
| Q |
105 |
gattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532211 |
gattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
37532310 |
T |
|
| Q |
205 |
tatttgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaataac |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532311 |
tatttgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaataac |
37532409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 37638757 - 37639054
Alignment:
| Q |
5 |
gactgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaa |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37638757 |
gactgagaggaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaa |
37638856 |
T |
|
| Q |
105 |
gattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
204 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37638857 |
gattgtggaatgctacctatgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
37638956 |
T |
|
| Q |
205 |
tatttgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaataa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
37638957 |
tatttgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatgaaaaaacctttcattgtgaccacaacagaatcattgtagtaataa |
37639054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 5 - 303
Target Start/End: Original strand, 37593215 - 37593513
Alignment:
| Q |
5 |
gactgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaa |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593215 |
gactgagaggaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaa |
37593314 |
T |
|
| Q |
105 |
gattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593315 |
gattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
37593414 |
T |
|
| Q |
205 |
tatttgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaataac |
303 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
37593415 |
tatttgataaatcaatagttgtgaaagcagtcaatatccttgttagctcaatgaaaaaacctttcactgtgaccacaacagaatcattatagtaataac |
37593513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 37822915 - 37823212
Alignment:
| Q |
5 |
gactgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaa |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37822915 |
gactgagaggaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaa |
37823014 |
T |
|
| Q |
105 |
gattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823015 |
gattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
37823114 |
T |
|
| Q |
205 |
tatttgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaataa |
302 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
37823115 |
tatttgataaatcaatagttgtgaaagcagtcaatatccttgttagctccatgaaaaaacctttcactgtgaccacaacagaatcattgtagtaataa |
37823212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 37710518 - 37710812
Alignment:
| Q |
5 |
gactgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaa |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37710518 |
gactgagaggaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaa |
37710617 |
T |
|
| Q |
105 |
gattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37710618 |
gattgtggaatgctacttgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
37710717 |
T |
|
| Q |
205 |
tatttgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||| ||||||||| || |||||||| |||||| |
|
|
| T |
37710718 |
tatttgataaatcaatagttgtgaaagcagtcaatatccttgttagctcaatgaaaaaacctttcactgtgaccacaacggaatcattgtagtaa |
37710812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 302
Target Start/End: Complemental strand, 37402147 - 37401850
Alignment:
| Q |
5 |
gactgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaa |
104 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37402147 |
gactgagaggaagttcaaatttgtcaaagcctcaggaatctcacccgtcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaa |
37402048 |
T |
|
| Q |
105 |
gattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37402047 |
gattgtggaatgctacctgtgattccattatttgaaagattaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
37401948 |
T |
|
| Q |
205 |
tatttgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaataa |
302 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
37401947 |
tatttgataaatcaatagttgtgaaagcagtcaatatccttgttagctcaatgaaaaaacctttcactgtgaccacaacagaatcattgtagtaataa |
37401850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 303
Target Start/End: Original strand, 37695606 - 37695904
Alignment:
| Q |
5 |
gactgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaa |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
37695606 |
gactgagaggaagttcaaatttgtcaaagccacaggaatctctcccgtcaattggttacatgagaggtccaaccactccaattttctcaaatgacccaaa |
37695705 |
T |
|
| Q |
105 |
gattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
204 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37695706 |
gattgtggaatactacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgt |
37695805 |
T |
|
| Q |
205 |
tatttgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaataac |
303 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
37695806 |
tatttgataaatcaatagttgtgaaagcagtcaatatccttgttagctcaatgaaaaaacctttcactgtgaccacaacagaatcattatagtaataac |
37695904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 37434734 - 37435016
Alignment:
| Q |
18 |
ttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagattgtggaatgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| ||||| ||||||||| ||||||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
37434734 |
ttcaaatttgtcaaagccacaggaatttcacccgtcaactggttttttgagaggtctaaccactccaaatgtctcaatttactcaaagattgtggaatgg |
37434833 |
T |
|
| Q |
118 |
tacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgttatttgataaatc |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
37434834 |
tacctgtgattctattgtttgaaaggttaagacctttgagagaatttaattctccaatgactagaggaatttttccttcaaacaagttatttgataaatc |
37434933 |
T |
|
| Q |
218 |
aatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37434934 |
aatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaat |
37435016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 37394032 - 37393740
Alignment:
| Q |
8 |
tgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
107 |
Q |
| |
|
||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
37394032 |
tgagaggaaattcaaatttgtcaaagccacgggaatctcacccttcaattggttccttgagaggtccaaccactctaaatttctcaaatgacttaaagat |
37393933 |
T |
|
| Q |
108 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgttat |
207 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || |||||| || |||||| |||||| |
|
|
| T |
37393932 |
tgtggaatggttcctgtgattccattgtttgagaggttaaggcctttgagagaatttaattctccaatgacttctgaaatttctccatcaaacttgttat |
37393833 |
T |
|
| Q |
208 |
ttgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaat |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| | |||| ||| || |||| |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
37393832 |
ttgataaatcaatagttgtaaaagtagtcaatatcctcgttaactctatggaaagacctttcattatgatcaccacagaatcattatagtaat |
37393740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 37701700 - 37701991
Alignment:
| Q |
8 |
tgagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagat |
107 |
Q |
| |
|
||||| ||| |||||||||||||||||| | |||||||||||| |||| |||| | |||||||||||||||||||| ||||| | || |||||||||| |
|
|
| T |
37701700 |
tgagaggaaattcaaatttgtcaaagccgcgggaatctcacccgtcaaacggttcctggagaggtccaaccactccaagtttcttagattactcaaagat |
37701799 |
T |
|
| Q |
108 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgttat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37701800 |
tgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttaagagaatataattctccaatgacttgtggaattctaccttcaaacatgttat |
37701899 |
T |
|
| Q |
208 |
ttgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaa |
299 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || |||||||||| |||||||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
37701900 |
ttgataaatcaatagttgtgaaagtcgtcaatatcctttttagctccatgaaaaaacctttcactatgaccaccacagaatcattgtagtaa |
37701991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 37383462 - 37383180
Alignment:
| Q |
18 |
ttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagattgtggaatgc |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||| | |||||||||| ||||||||| | ||||| |
|
|
| T |
37383462 |
ttcaaatttgtcaaagccaaaggaatctcacccttcaattggttccttgagaggtctaaccactctagatttctcaaactactcaaagaataaggaattg |
37383363 |
T |
|
| Q |
118 |
tacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgttatttgataaatc |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||| | |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37383362 |
tacctgtgattttattgtttgaaaggttaaggcctttgagagaaatcaattctccaaagacttgtggaatttctccttcaaacatgttatttgataaatc |
37383263 |
T |
|
| Q |
218 |
aatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaat |
300 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||| |
|
|
| T |
37383262 |
aatagttgtgaacgtggtcaatatctttgttagctccatagaaagtccttttactacgaccaccacagaatcattatagtaat |
37383180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 65 - 300
Target Start/End: Original strand, 37428126 - 37428358
Alignment:
| Q |
65 |
tgagaggtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaattt |
164 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
37428126 |
tgagaggtccaaccactccaagtttctcagattactcaaagattgtggaatgctacctgtgattccattgtttgaaa---taagacctttgagagaattc |
37428222 |
T |
|
| Q |
165 |
aattctccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatagaaaaac |
264 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
37428223 |
aattctccaacgacttgaggaatttctccttcaaacatgttatttgacaaatcaatagttgtgaaagttgtcaatatccttgttagctccatagaaaaac |
37428322 |
T |
|
| Q |
265 |
ctttcattgtgaccaccacagaatcattatagtaat |
300 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| |
|
|
| T |
37428323 |
ctttcactatgaccaccacagaatcattatagtaat |
37428358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 37440085 - 37440238
Alignment:
| Q |
9 |
gagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagatt |
108 |
Q |
| |
|
|||| ||| |||||||||||||||| ||| ||||| ||||| |||||||||| | |||||||||| ||||||| ||||||||||| | ||||||||||| |
|
|
| T |
37440085 |
gagaggaaattcaaatttgtcaaagtcacgggaatttcaccggtcaattggtttcttgagaggtccgaccactctaaatttctcaatttactcaaagatt |
37440184 |
T |
|
| Q |
109 |
gtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaat |
162 |
Q |
| |
|
|||||||| ||| | |||||||||| ||| | |||||||| ||||| ||||||| |
|
|
| T |
37440185 |
gtggaatggtacttttgattccattttttaagaggttaaggcctttaagagaat |
37440238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 291
Target Start/End: Original strand, 26450832 - 26450986
Alignment:
| Q |
137 |
tgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtc |
236 |
Q |
| |
|
|||||||||||||||| |||| || || || |||||||||| |||||| || |||||||| | || ||||||||||||| |||||||||||||||| |
|
|
| T |
26450832 |
tgaaaggttaagtcctatgagtgacttcaactctccaatgatcgttggaatctctccttcaaatttattgtttgataaatcaagagttgtgaaagtagtc |
26450931 |
T |
|
| Q |
237 |
aatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcat |
291 |
Q |
| |
|
|| ||| | |||||| | | || ||||| ||||||||||| |||||||||| |
|
|
| T |
26450932 |
aagatcctctctagctctaaatcgaacccttttattgtgaccacaacagaatcat |
26450986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 26437463 - 26437564
Alignment:
| Q |
137 |
tgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtc |
236 |
Q |
| |
|
|||||| ||||||||| |||| || || || |||||||||| | |||||| || |||||||| | || ||||||||||||| |||||||||||||||| |
|
|
| T |
26437463 |
tgaaagattaagtcctatgagtgacttcaactctccaatgattattggaatctctccttcaaatttattctttgataaatcaagagttgtgaaagtagtc |
26437562 |
T |
|
| Q |
237 |
aa |
238 |
Q |
| |
|
|| |
|
|
| T |
26437563 |
aa |
26437564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 16844132 - 16843850
Alignment:
| Q |
18 |
ttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagattgtggaatgc |
117 |
Q |
| |
|
|||||||||| ||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16844132 |
ttcaaatttgccaaagcctcaagaatctctcccgtcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagattgtggaatgc |
16844033 |
T |
|
| Q |
118 |
tacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgttatttgataaatc |
217 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16844032 |
tacccgtgattccattttttgaaaggttaagtccaatgagagaatataactctccaatgacttgtggaatttcaccttcaaacatgttatttgataaatc |
16843933 |
T |
|
| Q |
218 |
aatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaat |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||| || ||||||| |
|
|
| T |
16843932 |
aatagttgtgaaagtagtcaatatccttgttagctccatagaaaaacctttcactatgaccaccacagaatcgttgtagtaat |
16843850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 16846799 - 16846517
Alignment:
| Q |
18 |
ttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagattgtggaatgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||| |||||| | ||||||||||||||||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
16846799 |
ttcaaatttgtcaaagccacaggaatctctcccgtcatttggttccttgagaggtccaaccactccaaatgtctcaatttactcaaagattgtggaatgg |
16846700 |
T |
|
| Q |
118 |
tacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgttatttgataaatc |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
16846699 |
tacctgtgattctattgtttgaaaggttaagacctttgagagaatttaattctccaatgacctctggaatttttccttcaaacatgttatttgataaatc |
16846600 |
T |
|
| Q |
218 |
aatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaat |
300 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
16846599 |
aatagttgtgaaaatagtcaatatccttgttaactccatagaaaaacctttcactatgaccaccacagaatcattatagtaat |
16846517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 24218876 - 24218585
Alignment:
| Q |
9 |
gagatgaagttcaaatttgtcaaagccacaggaatctcacccttcaattggttgcatgagaggtccaaccactccaaatttctcaaatgactcaaagatt |
108 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||||| ||| |||| | ||| | |||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
24218876 |
gagaggaaattcaaatttgtcaaagccataggaatcttaccactcaagttgtttcttgagaggtccaaccactccaaatttcgcaaattactcaaagatt |
24218777 |
T |
|
| Q |
109 |
gtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgttatt |
208 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24218776 |
gtggaatggtacctatgatttgattgtgtgaaaggttaaggcctttgagaaaatttaatttcccaatgacttgtggaatttctccttcaaacatgttatt |
24218677 |
T |
|
| Q |
209 |
tgataaatcaatagttgtgaaagtagtcaatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaat |
300 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| | |||||||| |||||||| ||||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
24218676 |
cgataaatcaatcgttgtgaaagtagtcagtatcctcgttagctctatagaaaagcctttcattatgatcaccacagaatcattataataat |
24218585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 14552605 - 14552669
Alignment:
| Q |
236 |
caatatctttgttagctccatagaaaaacctttcattgtgaccaccacagaatcattatagtaat |
300 |
Q |
| |
|
||||||| |||| || |||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14552605 |
caatatccttgtaagatccatagaaagacctttcattacgaccaccacagaatcattatagtaat |
14552669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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