View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_32 (Length: 299)
Name: NF11740_low_32
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 275
Target Start/End: Original strand, 1792509 - 1792778
Alignment:
| Q |
5 |
tggaaaagaattttcctctgnnnnnnngaagcatgatgaattcaaagacttcaaaaggttatatgttatgtatttccgtcgcaacatatgcaacaatagg |
104 |
Q |
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| T |
1792509 |
tggaaaagaattttcctctgaaaaaaagaagcatgatgaattcaaagacttcaaaaggttatatgttatgtatttccgtcgcaacatatgcaacaatagg |
1792608 |
T |
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| Q |
105 |
tgcaaaactgagtgaatatgaaggaaaaaacctccaaaattgtaacttttgtccacaatccccttgacttcaaagaaacttcaaaaaccccccataaaat |
204 |
Q |
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| T |
1792609 |
tgcaaaactgagtgaata-gaagaaaaaaaactccaaaattgtaacttttgtcaaaaatccccttgacttcaaagaatcttcaaaaaccccccataaaat |
1792707 |
T |
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| Q |
205 |
tgtcaagcgttgctcaattaccccatctgtttgttttggcaattaaactctatgacgtaacagttacatgt |
275 |
Q |
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| T |
1792708 |
tgtcaagcgttgctcaattaccccatctgtttgttttggcagttaaactctatgacgtaacagttacatgt |
1792778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 45576006 - 45576094
Alignment:
| Q |
195 |
cccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcaattaaactctatgacgtaacagttacatgtacatgtgg |
283 |
Q |
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| T |
45576006 |
cccataaaattgtcaaacgttagtcaattaccccctccgtttgtttgggctattaaaccctttgacatgacatttatatgtacatgtgg |
45576094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 31633686 - 31633581
Alignment:
| Q |
177 |
aagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcaattaaactctatgacgtaacagttacatgta |
276 |
Q |
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| T |
31633686 |
aagaaacttcaaaaaccccc-ataaaattgtcaaacattagtccattaccccctccgtttgtttgggctgttaaaccctgtgacatgacaattatatgta |
31633588 |
T |
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| Q |
277 |
catgtgg |
283 |
Q |
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| T |
31633587 |
catgtgg |
31633581 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 21012484 - 21012413
Alignment:
| Q |
177 |
aagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattaccccatctgtttgttttggcaatta |
249 |
Q |
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| T |
21012484 |
aagaaacttcaaaa-ccccacttgaaattgtcaaacgttaatcaattaccccctctgtttgttttggctatta |
21012413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 29500069 - 29500137
Alignment:
| Q |
177 |
aagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattacccc-atctgtttgttttggc |
244 |
Q |
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| T |
29500069 |
aagaaacttcataaacctctcataaaattgtcaaacgttagtcaattacccctctccgtttgttttggc |
29500137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 45115003 - 45114917
Alignment:
| Q |
141 |
aaattgtaacttttgtccacaatccccttgacttcaaagaaacttcaaaaaccccccataaaattgtcaagcgttgctcaattacccc |
228 |
Q |
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| T |
45115003 |
aaattgtaactttcgtcaaaaacccccttgacttttaagaaacttc-aaaacccctcatgaaattgtcaaacgttagttaattacccc |
45114917 |
T |
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