View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_34 (Length: 284)
Name: NF11740_low_34
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 2023095 - 2023252
Alignment:
| Q |
111 |
aactagatcgccgtcccgtgctatcgcacgggtcaatgatgagcacataaaatatttgtacaattaatagcttatcactttgtataagcatacttatatt |
210 |
Q |
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| T |
2023095 |
aactagatcgttgtcccgtgctatcgcacgggtcaatgatgaacacataaaatatttctacaattaatagcttatcactttgtataagcatacttatatt |
2023194 |
T |
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| Q |
211 |
gagttgttcatgtaatgaaatcataagagataggactgattttaagcacactacctat |
268 |
Q |
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| T |
2023195 |
gagttgttcatgtaatgaaatcataagagataggactaattttaagcacactacctat |
2023252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 7893387 - 7893286
Alignment:
| Q |
11 |
tacatagtaacctataccaatatctatagaaagttatacatatatctatccattagattacaatatacaacaataacctgactagtgagattttcaatca |
110 |
Q |
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| T |
7893387 |
tacatagcaacctataccaatatctatagaaagctatacatatatctatccatttgattacaatatacaacaataacctgactagtgagattttcaatca |
7893288 |
T |
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| Q |
111 |
aa |
112 |
Q |
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|| |
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| T |
7893287 |
aa |
7893286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 8796095 - 8796059
Alignment:
| Q |
111 |
aactagatcgccgtcccgtgctatcgcacgggtcaat |
147 |
Q |
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| T |
8796095 |
aactagatcgccgacccgtgctatcgcacgggtcaat |
8796059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 3591054 - 3591022
Alignment:
| Q |
125 |
cccgtgctatcgcacgggtcaatgatgagcaca |
157 |
Q |
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| T |
3591054 |
cccgtgctatcacacgggtcaatgatgagcaca |
3591022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 18201202 - 18201170
Alignment:
| Q |
125 |
cccgtgctatcgcacgggtcaatgatgagcaca |
157 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
18201202 |
cccgtgctatcacacgggtcaatgatgagcaca |
18201170 |
T |
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