View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_41 (Length: 240)
Name: NF11740_low_41
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 18786875 - 18786644
Alignment:
| Q |
1 |
aaaccttatgcatgtatcgaaattttttaacgtcagtgagcaaattttttctgctaacttggtagtgccactaaccaacaacctatcaacttcaactgaa |
100 |
Q |
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| T |
18786875 |
aaaccttatgcttgtatccaatttgtttaacttcagtgagcaaattttttctgctaacttggtagtgccactaaccaacaacctatcaacttcaactgaa |
18786776 |
T |
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| Q |
101 |
tttcttttcgcttcactttcctacaaaacatagttggaaatttaaaggacattcacaaaacact-aaatttcatgtttnnnnnnntcgagggctgagtga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
18786775 |
tttcttttcgcttcactttcctacaaaacatagttggaaatttaaagggcattcacaaaacactcaaatttcatgtttaaaaaaatcgagggctgagtga |
18786676 |
T |
|
| Q |
200 |
ttcgtacagataattcattcttcagttctctg |
231 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18786675 |
ttcgtacagataattcattcttcagttctctg |
18786644 |
T |
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