View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_42 (Length: 237)
Name: NF11740_low_42
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45232376 - 45232597
Alignment:
| Q |
1 |
acttaccatcttgacacatagttgaattaggtgattcttttgaaagctctagaacatttgttttttcagagctaggcatatgaatgtgcatgcatttgcc |
100 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45232376 |
acttaccatctttacacatatttgaattaggtgattcttttgaaagctctagaacatttgttttttcagagctaggcatatgaatgtgcatgcatttgcc |
45232475 |
T |
|
| Q |
101 |
aagttcttcttctccggccagcaatttcaactcatagttgaatatgctggcaattctattcctaggtgtagattgcacaaatgtgcctaatgaagttgtc |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
45232476 |
aagttcttcttctccggccaacaatttcaactcatagttgcttatgctggcaattctattcctaggtgtagattgcacaaatgtgcctattgaagttgcc |
45232575 |
T |
|
| Q |
201 |
acctcctcagcaaggtaggttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
45232576 |
acctcctcagcaaggtaggttg |
45232597 |
T |
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