View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_43 (Length: 235)
Name: NF11740_low_43
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 22162868 - 22162707
Alignment:
| Q |
69 |
gtttgcataggtagatggagtaaacttgtgcagcaagttatgttgtctgttatcttgcatattatttggaaaatctcgatagaaagaaacagtagatatt |
168 |
Q |
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| T |
22162868 |
gtttgtataagtagatgtagtaaacttgtgcagcaagttatgttgtctgttatcttgcatattatttggaaaatctggatagaaagaaacagtagatatt |
22162769 |
T |
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| Q |
169 |
tttcagtatcagcacactaccatttctagcatgataaatggtataatagttgatgtccatct |
230 |
Q |
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| T |
22162768 |
tttcaagatcagcacactaccatttctagcatgataaatggtataatagttgaagttcatct |
22162707 |
T |
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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 22163544 - 22163488
Alignment:
| Q |
15 |
agcaaaggtactaatcagcaacttgatatttcaaattggcatagtcttatcatcgtt |
71 |
Q |
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| T |
22163544 |
agcaaaggtactgatcagcaacttgatatttcaaattggcatagtcttatcatcgtt |
22163488 |
T |
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