View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_5 (Length: 683)
Name: NF11740_low_5
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Original strand, 39543817 - 39544258
Alignment:
| Q |
14 |
cagagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcgttattgggat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
39543817 |
cagagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcattgttgggat |
39543916 |
T |
|
| Q |
114 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagcc |
213 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39543917 |
caaagacttgttattgttgggtcgagctatctcggcccatgatacaaggaacatgtttgcagaatatgcgtccgctatacgatggtcaaaagtgcaagcc |
39544016 |
T |
|
| Q |
214 |
actactaatccaccacatttcatccatgttgtctgcatagtaacaatgacgattaaaacactttataatctatactatatacaaagtggtcccaaaccta |
313 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
39544017 |
actactaatccaccacatttcatccatgttgtctgcatagtaacaatgacgattaaaacac-ttataatctatactatatacaaagcggtcccaaaccta |
39544115 |
T |
|
| Q |
314 |
caccactagaccaactaagtcgttaaaaattaaaatttaataaaaactattgtgagtaatttattcacatcagtgcaataaaaagataagactgacgggt |
413 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
39544116 |
caccactagaccaaccaagtcgttaaaaattaaaatttaataaaatctattgtttgtaatttatccacatcggtgcaataaaaagataagactgacgggt |
39544215 |
T |
|
| Q |
414 |
gaagaatgttcgtctaaaggttagtactaattatgatattgat |
456 |
Q |
| |
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| |||||| |||||||| | | ||||||||||||||| |||| |
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| T |
39544216 |
aatgaatgtccgtctaaacgctggtactaattatgataatgat |
39544258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 39553836 - 39554097
Alignment:
| Q |
14 |
cagagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcgttattgggat |
113 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |
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|
| T |
39553836 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
39553935 |
T |
|
| Q |
114 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||| |
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|
| T |
39553936 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagcc |
39554035 |
T |
|
| Q |
214 |
actactaatccaccacatttcatccatgttgtctgcatagtaacaatgacgattaaaacact |
275 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||||| |
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|
| T |
39554036 |
actactaaaccaccacatttcatccaagttgcctgcatagtaacaatgataattaaaacact |
39554097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 447 - 666
Target Start/End: Original strand, 39544742 - 39544961
Alignment:
| Q |
447 |
tgatattgattattataacagtacatgcttatagtaattctttgcctattggaatattcccttgagaacaaaatgttttgttaataaaataaatcttttt |
546 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39544742 |
tgataatgattattataacaatacatgcttatagtaattctttgccaattggaatattcccttgagaacaaaatgttttgttaataaaataaatcttttt |
39544841 |
T |
|
| Q |
547 |
tcacctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatc |
646 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39544842 |
tcacctgagcagcaagcacaccatgtttcttctttggaacaagcttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatc |
39544941 |
T |
|
| Q |
647 |
agcaaaagcttcaacaaaat |
666 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
39544942 |
agcaaaagcttcaacaaaat |
39544961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 549 - 666
Target Start/End: Original strand, 39554158 - 39554275
Alignment:
| Q |
549 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39554158 |
acctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcag |
39554257 |
T |
|
| Q |
649 |
caaaagcttcaacaaaat |
666 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
39554258 |
caaaagcttcaacaaaat |
39554275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 39586948 - 39587191
Alignment:
| Q |
16 |
gagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcgttattgggatca |
115 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| |||||||||||| ||| |||||||| ||| |||| | |||||||||||| ||| ||||||||| |
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|
| T |
39586948 |
gagatggggatgtacatgtcatagagtgaaggatggatggaaggtgggtgtcttggggtcagaagggacctttgaaaacaaggttgtgttgttgggatca |
39587047 |
T |
|
| Q |
116 |
aagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagccac |
215 |
Q |
| |
|
|||||||||||| | | || ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||| ||||| |
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|
| T |
39587048 |
aagacttgttattgctcgatcgggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccac |
39587147 |
T |
|
| Q |
216 |
tactaatccaccacatttcatccatgttgtctgcatagtaacaa |
259 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||| ||| |||| |
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|
| T |
39587148 |
tactaacccaccacatttcatccaagttgcctgcacagttacaa |
39587191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 545 - 666
Target Start/End: Original strand, 39587271 - 39587392
Alignment:
| Q |
545 |
tttcacctgaacagcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaaca |
644 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||| ||||| |||||||||| ||||||||| ||||||||| |
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|
| T |
39587271 |
tttcacctgaacagcaagtacaccatatttcttctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaaca |
39587370 |
T |
|
| Q |
645 |
tcagcaaaagcttcaacaaaat |
666 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
39587371 |
tcagcaacagcttcaacaaaat |
39587392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 17503782 - 17503870
Alignment:
| Q |
142 |
atctcggcccatgatacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagccactactaatccaccaca |
230 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||| || ||||| ||||| ||||| ||||| |||||||||| |||||||| |
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|
| T |
17503782 |
atctcggcccatgatactaggaacatgtttgttgaatatgcatctgctatgcgatgatcaaatgtgcatgccactactatcccaccaca |
17503870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 561 - 666
Target Start/End: Original strand, 17484768 - 17484873
Alignment:
| Q |
561 |
agcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaa |
660 |
Q |
| |
|
||||| ||||| |||||||| ||||||| || |||||||||| |||||| || ||||| |||||||| |||| | |||||||||||||| |||||||| |
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|
| T |
17484768 |
agcacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaattgaggcattgaagctcaacatcagcaacagcttcaa |
17484867 |
T |
|
| Q |
661 |
caaaat |
666 |
Q |
| |
|
|||||| |
|
|
| T |
17484868 |
caaaat |
17484873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 666
Target Start/End: Original strand, 17507043 - 17507148
Alignment:
| Q |
561 |
agcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaa |
660 |
Q |
| |
|
||||| ||||| |||||||| ||||||| || |||||||||| |||||| || ||||| |||||||| |||| | ||||||||||||| |||||||| |
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|
| T |
17507043 |
agcacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaattgaggcattgaagttcaacatcagcaacagcttcaa |
17507142 |
T |
|
| Q |
661 |
caaaat |
666 |
Q |
| |
|
|||||| |
|
|
| T |
17507143 |
caaaat |
17507148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 17475654 - 17475735
Alignment:
| Q |
137 |
gagctatctcggcccatgatacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagccactac |
218 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||| ||| || || || ||||| ||||| ||||| ||||| |||||||| |
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|
| T |
17475654 |
gagccatctcggcccatgatactaagaacatgtttgttgagtaggcatctgctatgcgatgatcaaatgtgcatgccactac |
17475735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 337 - 397
Target Start/End: Original strand, 32797430 - 32797490
Alignment:
| Q |
337 |
taaaaattaaaatttaataaaaactattgtgagtaatttattcacatcagtgcaataaaaa |
397 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||||||| ||||| || ||||||||| |
|
|
| T |
32797430 |
taaaaattaaaatttcataaaaattattgttcgtaatttatacacattagcacaataaaaa |
32797490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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