View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_6 (Length: 615)
Name: NF11740_low_6
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 600
Target Start/End: Original strand, 21199411 - 21199987
Alignment:
| Q |
19 |
atcaagaaaatcaaggatgcaatgcaatagtgggctaatggaatatgcttttgagtactttaagcaaaaatttggtctaacaacagaaagctattacctt |
118 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21199411 |
atcaagaaaatcaaggatgcaat-----agtgcgctaatggaatatgcttttgagtactttaagcaaaaatgtggtctaacaacagaaagctattacctt |
21199505 |
T |
|
| Q |
119 |
acacaggaaattatgttggatcttgtgttccatcaaatctgaatatgccatgataaatttcattnnnnnnntcgaataaaattgacaaataactttagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21199506 |
acacaggaaattatgttggatcttgtgttccatcaaatctgaatatgccatgataaatttcattaaaaaaatcgaataaaattgacaaataactttagaa |
21199605 |
T |
|
| Q |
219 |
acttatcattgcaatagtcaaatgatggctatgaggttgttctagccagtcacgaaaggctgtcatcccacgtccactctcttggcgtccctttctttca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21199606 |
acttatcattgcaatagtcaaatgatggctatgaggttgttctagccagtcacgaaaggctgtcatcccacgtccactctcttggcgtccctttctttca |
21199705 |
T |
|
| Q |
319 |
cccacttgtaaaatctcgttgaagtcccccattaccataaacggatatgctgcacgccttgaccttaacttgtcctcaatggcatcatacactgcttttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21199706 |
cccacttgtaaaatctcgttgaagtcccccattaccataaacggatatgctgcacgccttgaccttaacttgtcctcaatggcatcatacactgcttttc |
21199805 |
T |
|
| Q |
419 |
tagcctttaatccacgtggaagatacaccaacatgatagacactttcataggttgtggatattgaacctcaccttcaacataaatccatctattatctat |
518 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21199806 |
tagccttcaatccacgaggaagatacaccaacatgatagacactttcacaggttgtggatattgaaccccaccttcaacataaatccatctattatctat |
21199905 |
T |
|
| Q |
519 |
ttcttcgtgcaactttgtgaaatgatttttactccaacctagtattagtcaagtacttgttcgtccacttccatctcctacc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
21199906 |
ttcttcgtgcaactttgtgaaatgatttttactccaacctagtattagtccagtacttgtttgtccacttccatctcctacc |
21199987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 498 - 600
Target Start/End: Complemental strand, 21202870 - 21202768
Alignment:
| Q |
498 |
ataaatccatctattatctatttcttcgtgcaactttgtgaaatgatttttactccaacctagtattagtcaagtacttgttcgtccacttccatctcct |
597 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
21202870 |
ataaatccatctattatctatttcttcgtgcaactttgtgaaatgatttttacaccaacctagtattagtccagtacttgctcgtccacttccatctcct |
21202771 |
T |
|
| Q |
598 |
acc |
600 |
Q |
| |
|
||| |
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|
| T |
21202770 |
acc |
21202768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 96 - 264
Target Start/End: Complemental strand, 2948485 - 2948312
Alignment:
| Q |
96 |
taacaacagaaagctattacc-ttacacaggaaattatgttggatcttgtgttccatcaaatctgaatatgccatgataaatttcatt----nnnnnnnt |
190 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
2948485 |
taacaacagaaagctattacccttacacagaaaattatcttggatcttgtgttccatcaaatgtgaatatgccatgataaatttcattaaaaaaaaaaat |
2948386 |
T |
|
| Q |
191 |
cgaataaaattgacaaataactttagaaacttatcattgcaatagtcaaatgatggctatgaggttgttctagc |
264 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
2948385 |
cgaataaaattgacaaataactttagaaacttaacattgcaatagtcaaatgatggctatgagcctgttctagc |
2948312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 34312071 - 34311965
Alignment:
| Q |
19 |
atcaagaaaatcaaggatgcaatgcaatagtgggctaatggaatatgcttttgagtactttaagcaaaaatttggtctaacaacagaaagctatta-cct |
117 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||| ||| |
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| T |
34312071 |
atcaagaaaatcaaggatgcaatg-----gtgggctaatggaatatgcttttgagtacatcaagcaaaaaggtggcataacaacagaaagctattaccct |
34311977 |
T |
|
| Q |
118 |
tacacaggaaat |
129 |
Q |
| |
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||||||| |||| |
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|
| T |
34311976 |
tacacagcaaat |
34311965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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