View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11740_low_9 (Length: 526)
Name: NF11740_low_9
Description: NF11740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11740_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 52544614 - 52544106
Alignment:
| Q |
1 |
aattggttgataaaattaaaaaagagattatttgagttacccatttgtgcttgcttgtgagataacgacgattgaggagaaattggcaaggttccttcaa |
100 |
Q |
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| T |
52544614 |
aattggttgataaaattaaaaaagagattatttgagttacccatttgtgcttgcttgtgagataacgacgattgaggagaaattggcaaggttccttcaa |
52544515 |
T |
|
| Q |
101 |
atcccaatagagcataactagtatgagagaacataattcttggacaaaattatttctttgaaaacaaaagaagcatgcacattgcacaaacacacaattt |
200 |
Q |
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| T |
52544514 |
atcccaatagagcataactagtatgagagaacataattcttggacaaaattatttctttgaaaacaaaagaagcatgcacattgcacaaacacacaattt |
52544415 |
T |
|
| Q |
201 |
aaaagttttgcacaagcacacaattcaagaagaatcaatatttcaagccataacagaacatattcaaaggcaagaaaagtcaggaacatccaaccatgta |
300 |
Q |
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| T |
52544414 |
aaaagttttgcacaagcacacaattcaagaagaatcaatatttcaagccataacagaacatattcaaaggcaagaaaagtcaggaacatccaaccatgta |
52544315 |
T |
|
| Q |
301 |
ccatgcacgataggcttagttcagcataaaaggctagcattaaaataaaaaactgatgatgaagtatttctacaagcaatcaattgcgtcaagaccacca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52544314 |
ccatgcacgataggcttagttcagcataaaaggctagcattaaaatcaaaaactgatgatgaagtatttctacaagcaatcaattgagtcaagaccacca |
52544215 |
T |
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| Q |
401 |
taaacaatcagagccaactgaatttatacacaaactgtatgatagacacaaagcatttatcaacaatcctataaacgggacatctagtaaagtgcattga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52544214 |
taaacaatcagagccaactgaatttatacacaaactgtatgatagacacaaagcatttatcaacaatcctat----gggacatctagtaaagtgcattga |
52544119 |
T |
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| Q |
501 |
tgaacgatccatc |
513 |
Q |
| |
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||||||||||||| |
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| T |
52544118 |
tgaacgatccatc |
52544106 |
T |
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