View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11741_high_14 (Length: 229)

Name: NF11741_high_14
Description: NF11741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11741_high_14
NF11741_high_14
[»] chr3 (19 HSPs)
chr3 (7-229)||(7324202-7324424)
chr3 (7-229)||(2476692-2476914)
chr3 (7-229)||(2635779-2636001)
chr3 (7-222)||(9561763-9561978)
chr3 (111-229)||(2644127-2644245)
chr3 (111-222)||(754387-754498)
chr3 (111-229)||(2492262-2492380)
chr3 (94-229)||(2631502-2631637)
chr3 (111-220)||(9565609-9565718)
chr3 (112-229)||(7334028-7334145)
chr3 (111-229)||(7442748-7442866)
chr3 (111-222)||(2502364-2502475)
chr3 (111-206)||(768120-768215)
chr3 (111-221)||(9594385-9594495)
chr3 (111-166)||(666992-667047)
chr3 (121-219)||(43992135-43992233)
chr3 (111-168)||(7942650-7942707)
chr3 (6-78)||(2659074-2659146)
chr3 (192-220)||(9586959-9586987)
[»] chr4 (1 HSPs)
chr4 (111-222)||(41456255-41456366)
[»] scaffold0044 (1 HSPs)
scaffold0044 (114-219)||(89311-89416)
[»] chr2 (1 HSPs)
chr2 (111-168)||(33020478-33020535)
[»] scaffold0097 (1 HSPs)
scaffold0097 (114-177)||(34168-34231)
[»] chr5 (4 HSPs)
chr5 (185-222)||(20293226-20293263)
chr5 (185-222)||(20301673-20301710)
chr5 (185-222)||(20306086-20306123)
chr5 (185-222)||(20310490-20310527)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 7324424 - 7324202
Alignment:
Q  7 ttcctaacatgcaagatcacggtttagaagcctacgatgctttatacatttctgaggatgaccaacttttggccgattgtattgagattgaaagtggcaa 106  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7324424 ttcctaacatgcaagatcgcggtttagaagcctacgatgctttatacatttctgaggatgaccaacttttggtcgattgtattgagattgaaagtggcaa 7324325  T
Q  107 tgataagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7324324 tgataagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagt 7324225  T
Q  207 ttgatatcaccttaagttgggat 229  Q
    |||||||||||||||| ||||||    
T  7324224 ttgatatcaccttaagctgggat 7324202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 2476692 - 2476914
Alignment:
Q  7 ttcctaacatgcaagatcacggtttagaagcctacgatgctttatacatttctgaggatgaccaacttttggccgattgtattgagattgaaagtggcaa 106  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||| |||    
T  2476692 ttcctaacatgcaagatcggggtttagaagcctacaatgctttatacatttctgaggatgaccaactgttggtcgagtgtcttgagattgaaagtgacaa 2476791  T
Q  107 tgataagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagt 206  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||| | ||||||||||||||||||||    
T  2476792 tgataagttggttgtttacgattccaaaactggtacttcgaatattcctgagtttcaaaacaaatatgacctgatatactcaaatgtctacattgagagt 2476891  T
Q  207 ttgatatcaccttaagttgggat 229  Q
    |||||||||||||||| ||||||    
T  2476892 ttgatatcaccttaagctgggat 2476914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 2635779 - 2636001
Alignment:
Q  7 ttcctaacatgcaagatcacggtttagaagcctacgatgctttatacatttctgaggatgaccaacttttggccgattgtattgagattgaaagtggcaa 106  Q
    |||||||||||||| |||  |||||||||| |||  | |||||||| ||||||||||||||||||||  |     | |||  |||||||||||||||  |    
T  2635779 ttcctaacatgcaacatcggggtttagaagtctataaagctttatatatttctgaggatgaccaactactcctgcagtgttatgagattgaaagtggaga 2635878  T
Q  107 tgataagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagt 206  Q
    |   ||||||||| ||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  2635879 tatgaagttggttgtttacgattccaaaaatggtactttaaatattcccgagtttcaaaacaactatgaacagatatacccaaatgtctacattgcgagt 2635978  T
Q  207 ttgatatcaccttaagttgggat 229  Q
    |||||||||||||||||||||||    
T  2635979 ttgatatcaccttaagttgggat 2636001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 9561978 - 9561763
Alignment:
Q  7 ttcctaacatgcaagatcacggtttagaagcctacgatgctttatacatttctgaggatgaccaacttttggccgattgtattgagattgaaagtggcaa 106  Q
    ||||||||||||||||||||||||||||||| ||   || |||||| | ||||||||||||||||||  ||   || | || ||||||   ||||| |||    
T  9561978 ttcctaacatgcaagatcacggtttagaagcttatactgttttatatagttctgaggatgaccaactgctgctagagtttaatgagatgcgaagtgacaa 9561879  T
Q  107 tgataagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagt 206  Q
     |  ||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| ||||||||||||||    
T  9561878 agtgaagttggttgtttacgattctaagactggtactttgaatattcctgagtttcaaaacaactatgatcagatatgccaaaatttctacattgagagt 9561779  T
Q  207 ttgatatcaccttaag 222  Q
    ||||||||||||||||    
T  9561778 ttgatatcaccttaag 9561763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 2644245 - 2644127
Alignment:
Q  111 aagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttga 210  Q
    ||||||||| |||| |||||||||||||| || |||||||||||||||||||||||||| ||||| | ||||| | ||||||||||||||||||||||||    
T  2644245 aagttggttgtttatgattccaaaactggcacattgaatattcctgagtttcaaaacaaatatgacctgatatactcaaatgtctacattgagagtttga 2644146  T
Q  211 tatcaccttaagttgggat 229  Q
    |||||||||||| ||||||    
T  2644145 tatcaccttaagctgggat 2644127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 754498 - 754387
Alignment:
Q  111 aagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttga 210  Q
    ||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||  ||| || || |||||||||||||||||||||    
T  754498 aagttggttgtttatgattccaagactggtactctgaatattcctgagtttcaaaacaactatgaacaaataggctcagatgtctacattgagagtttga 754399  T
Q  211 tatcaccttaag 222  Q
    ||||||||||||    
T  754398 tatcaccttaag 754387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 111 - 229
Target Start/End: Original strand, 2492262 - 2492380
Alignment:
Q  111 aagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttga 210  Q
    ||||||||| |||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||| |  || | ||||||||||||||||||||||||    
T  2492262 aagttggttgtttatgattccaagactgatactttgaatattccagagtttcaaaacaactatgaaccggaatactcaaatgtctacattgagagtttga 2492361  T
Q  211 tatcaccttaagttgggat 229  Q
    |||||||||||| ||||||    
T  2492362 tatcaccttaagctgggat 2492380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 2631502 - 2631637
Alignment:
Q  94 ttgaaagtggcaatgataagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgt 193  Q
    |||| |||||| | || ||||||||| | ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||  |||| || ||| ||    
T  2631502 ttgacagtggcgaggagaagttggttgtctacgattccaaaactggtatttttaatattcttgagtttcaaaacaactatgaacatatatcccaaaaagt 2631601  T
Q  194 ctacattgagagtttgatatcaccttaagttgggat 229  Q
    ||||||||||||||| ||||||||||||| ||||||    
T  2631602 ctacattgagagtttaatatcaccttaagctgggat 2631637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 9565718 - 9565609
Alignment:
Q  111 aagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttga 210  Q
    ||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||| ||| | ||  | ||||||||||||||||||||||||    
T  9565718 aagttggttgtttatgattccaagaccggtactttgaatattcctgagtttcaaaacaactataaacaggtagcctcaaatgtctacattgagagtttga 9565619  T
Q  211 tatcacctta 220  Q
    ||||||||||    
T  9565618 tatcacctta 9565609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 7334145 - 7334028
Alignment:
Q  112 agttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttgat 211  Q
    |||||||| |||| ||| |||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||  | |||||||||||||||||||||||||    
T  7334145 agttggttgtttatgatcccaaaactggtactttaaatatccctgagtttcaaaacaactataaactgatagactcaaatgtctacattgagagtttgat 7334046  T
Q  212 atcaccttaagttgggat 229  Q
    ||| || |||| ||||||    
T  7334045 atcgccctaagctgggat 7334028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 7442866 - 7442748
Alignment:
Q  111 aagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttga 210  Q
    ||||||| | |||| |||||||| || |||||||||||||||||||||||| |||| | |||||||| ||||| | ||||||||||||||||||||||||    
T  7442866 aagttggctgtttatgattccaagacgggtactttgaatattcctgagtttgaaaaaacctatgaaccgatatactcaaatgtctacattgagagtttga 7442767  T
Q  211 tatcaccttaagttgggat 229  Q
    |||| || |||| ||||||    
T  7442766 tatcgccctaagctgggat 7442748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 2502364 - 2502475
Alignment:
Q  111 aagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttga 210  Q
    ||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |  | |    ||| | ||||||||||||||||||    
T  2502364 aagtttgttgtttatgattccaaaactggcactttgaatattcctgagtttcaaaacaactatgagcatagagatgcaattttctacattgagagtttga 2502463  T
Q  211 tatcaccttaag 222  Q
    ||||||||||||    
T  2502464 tatcaccttaag 2502475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 768215 - 768120
Alignment:
Q  111 aagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagt 206  Q
    ||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||||||||  | |||   |||||| |||||||||||||||    
T  768215 aagttggttgtttacgattccaaaactgctacttttaatattcttgagtttcaaaacaactatgctcagatgaacccaaaagtctacattgagagt 768120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 9594495 - 9594385
Alignment:
Q  111 aagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttga 210  Q
    ||||||| | |||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||  | ||    |||||  ||||||||||||||| | |    
T  9594495 aagttggctgtttacgattccaaaactgttacttttaatattcttgagtttcaaaacaactgtgctcagaagcacccaatagtctacattgagagtctca 9594396  T
Q  211 tatcaccttaa 221  Q
    |||||||||||    
T  9594395 tatcaccttaa 9594385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 667047 - 666992
Alignment:
Q  111 aagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaa 166  Q
    ||||||||| |||| |||||||| ||| ||||||||||||||||||||||||||||    
T  667047 aagttggttgtttatgattccaagactagtactttgaatattcctgagtttcaaaa 666992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 43992135 - 43992233
Alignment:
Q  121 tttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttgatatcacctt 219  Q
    ||||||||||||||| ||||||| |||| ||||||||| ||||||||| | |||   |||||  |||  | || ||| |||||||||||||||||||||    
T  43992135 tttacgattccaaaaatggtactctgaagattcctgagattcaaaacaccaatggttggatagaccctgaagtttacgttgagagtttgatatcacctt 43992233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 7942650 - 7942707
Alignment:
Q  111 aagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaaca 168  Q
    ||||||||| |||||||||||||||  | ||||||||| |||| |||| |||||||||    
T  7942650 aagttggttgtttacgattccaaaaacgatactttgaagattcatgagattcaaaaca 7942707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 2659146 - 2659074
Alignment:
Q  6 attcctaacatgcaagatcacggtttagaagcctacgatgctttatacatttctgaggatgaccaacttttgg 78  Q
    ||||||||| |||||||||| | |||||||||| |    |||||||| ||||| |||||||||||||| ||||    
T  2659146 attcctaacctgcaagatcaggatttagaagccgatagagctttatatatttcagaggatgaccaactattgg 2659074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 9586987 - 9586959
Alignment:
Q  192 gtctacattgagagtttgatatcacctta 220  Q
    |||||||||||||||||||||||||||||    
T  9586987 gtctacattgagagtttgatatcacctta 9586959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 41456255 - 41456366
Alignment:
Q  111 aagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttga 210  Q
    ||||||||| |||| |||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |  ||| ||| |||||||||||||||| |    
T  41456255 aagttggttgtttatgatttcaagattggtactttgaatattcctgagtttcaaaacaactatgaacggacagaccctaatatctacattgagagtttaa 41456354  T
Q  211 tatcaccttaag 222  Q
    ||||||||||||    
T  41456355 tatcaccttaag 41456366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 89311 - 89416
Alignment:
Q  114 ttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaacggatatgcccaaatgtctacattgagagtttgatat 213  Q
    |||||| |||| ||||| |||| |||||||||||| ||||||| | ||||||||| | ||   |||||   |||||| ||||||||||||||||||||||    
T  89311 ttggttgtttatgattcaaaaaatggtactttgaagattcctgtgattcaaaacatcaatcgtcggatggacccaaaagtctacattgagagtttgatat 89410  T
Q  214 cacctt 219  Q
    ||||||    
T  89411 cacctt 89416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 33020478 - 33020535
Alignment:
Q  111 aagttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaaca 168  Q
    ||||||||| ||||||||||||||  |||||||||||| ||||||||| |||||||||    
T  33020478 aagttggttgtttacgattccaaagatggtactttgaagattcctgagattcaaaaca 33020535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 34168 - 34231
Alignment:
Q  114 ttggttctttacgattccaaaactggtactttgaatattcctgagtttcaaaacaactatgaac 177  Q
    |||||| |||| ||| |||||||||| |||| |||||||||| ||||||||||| |||||||||    
T  34168 ttggttgtttatgataccaaaactggcacttcgaatattcctcagtttcaaaacgactatgaac 34231  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 20293226 - 20293263
Alignment:
Q  185 cccaaatgtctacattgagagtttgatatcaccttaag 222  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  20293226 cccaaaagtctacattgagagtttaatatcaccttaag 20293263  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 20301673 - 20301710
Alignment:
Q  185 cccaaatgtctacattgagagtttgatatcaccttaag 222  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  20301673 cccaaaagtctacattgagagtttaatatcaccttaag 20301710  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 20306086 - 20306123
Alignment:
Q  185 cccaaatgtctacattgagagtttgatatcaccttaag 222  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  20306086 cccaaaagtctacattgagagtttaatatcaccttaag 20306123  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 20310490 - 20310527
Alignment:
Q  185 cccaaatgtctacattgagagtttgatatcaccttaag 222  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  20310490 cccaaaagtctacattgagagtttaatatcaccttaag 20310527  T

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