View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11741_high_6 (Length: 322)

Name: NF11741_high_6
Description: NF11741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11741_high_6
NF11741_high_6
[»] chr5 (13 HSPs)
chr5 (2-307)||(17419296-17419601)
chr5 (2-51)||(30398663-30398712)
chr5 (8-56)||(30678644-30678692)
chr5 (9-79)||(30481951-30482023)
chr5 (2-79)||(29870805-29870884)
chr5 (2-44)||(30243777-30243819)
chr5 (2-56)||(30339930-30339984)
chr5 (2-51)||(30434471-30434520)
chr5 (9-46)||(30748297-30748334)
chr5 (11-67)||(29851932-29851988)
chr5 (3-51)||(30058937-30058985)
chr5 (189-236)||(30678918-30678965)
chr5 (184-221)||(29870619-29870656)
[»] chr7 (2 HSPs)
chr7 (2-49)||(26705914-26705961)
chr7 (129-215)||(26705690-26705782)
[»] chr4 (1 HSPs)
chr4 (2-44)||(20298152-20298194)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 2 - 307
Target Start/End: Original strand, 17419296 - 17419601
Alignment:
Q  2 ggaaccggggaggattgggacaagatagctcatattccaaaaataaagttaaagtattaagaagcaagagacgtttacaggtaggatctctatttcccct 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17419296 ggaaccggggaggattgggacaagatagctcatattccaaaaataaagttaaagtattaagaagcaagagacgtttacaggtagaatctctatttcccct 17419395  T
Q  102 tcttacatgtacgatgcaattgacttgatttttattcaaaaatctttatattttctcattgttgacttcttcagaaagagcaccagagtacatgaaagat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  17419396 tcttacatgtacgatgcaattgacttgatttttattcaaaaatctttatattttctcgttgttgacttcttcagaaagagcactagagtacatgaaagat 17419495  T
Q  202 attttactgctcaacctaaggagaaattttctaatagttgtgcaggtaattttcttcatcatagtatctatgtgcaggaattacttgcttgttacactgt 301  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17419496 attttactgctcaaccaaaggagaaattttctaatagttgtgcatgtaattttcttcatgatagtatctatgtgcaggaattacttgcttgttacactgt 17419595  T
Q  302 tgttgg 307  Q
    ||||||    
T  17419596 tgttgg 17419601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 30398712 - 30398663
Alignment:
Q  2 ggaaccggggaggattgggacaagatagctcatattccaaaaataaagtt 51  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  30398712 ggaacaggggaggattgggacaagatagctcatattccaaaaatacagtt 30398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 30678644 - 30678692
Alignment:
Q  8 ggggaggattgggacaagatagctcatattccaaaaataaagttaaagt 56  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  30678644 ggggaggattgggacaagatagctcatattccaaaaatacagtttaagt 30678692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 30482023 - 30481951
Alignment:
Q  9 gggaggattgggacaagatagctcatattccaaaaataaagttaa---agtattaagaagcaagagacgtttac 79  Q
    |||||||||||||||||||||||||||||||||||||| |||| |   || |||||||||| ||||||||||||    
T  30482023 gggaggattgggacaagatagctcatattccaaaaatacagtttaccgaggattaagaagc-agagacgtttac 30481951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 29870884 - 29870805
Alignment:
Q  2 ggaaccggggaggattgggacaagatagctcatattccaaaaataaagttaa---agtattaagaagcaagagacgtttac 79  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| |||| |   || |||||||||| ||||||||||||    
T  29870884 ggaacaggggaggattgggacaagatagctcatattccaataatacagtttaccgaggattaagaagc-agagacgtttac 29870805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 30243777 - 30243819
Alignment:
Q  2 ggaaccggggaggattgggacaagatagctcatattccaaaaa 44  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  30243777 ggaacaggggaggattgggacaagatagctcatattccaaaaa 30243819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 30339930 - 30339984
Alignment:
Q  2 ggaaccggggaggattgggacaagatagctcatattccaaaaataaagttaaagt 56  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  30339930 ggaacaggggaggattgggacaagatagctcatattccaaatatacagtttaagt 30339984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 30434520 - 30434471
Alignment:
Q  2 ggaaccggggaggattgggacaagatagctcatattccaaaaataaagtt 51  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  30434520 ggaacaggggaggattgggacaagatagctcatattccaagaatagagtt 30434471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 30748334 - 30748297
Alignment:
Q  9 gggaggattgggacaagatagctcatattccaaaaata 46  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30748334 gggaggattgggacaagatagctcatattccaaaaata 30748297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 29851988 - 29851932
Alignment:
Q  11 gaggattgggacaagatagctcatattccaaaaataaagttaaagtattaagaagca 67  Q
    |||||||||||||||||| ||||||||||||| ||| |||| || ||||||||||||    
T  29851988 gaggattgggacaagatatctcatattccaaatatacagtttaactattaagaagca 29851932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 30058985 - 30058937
Alignment:
Q  3 gaaccggggaggattgggacaagatagctcatattccaaaaataaagtt 51  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  30058985 gaacaggggaggattgggacaagatatctcatattccaaaaatacagtt 30058937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 30678918 - 30678965
Alignment:
Q  189 gtacatgaaagatattttactgctcaacctaaggagaaattttctaat 236  Q
    ||||||||||||||||||||||||||||||| ||| || | |||||||    
T  30678918 gtacatgaaagatattttactgctcaacctacggacaattgttctaat 30678965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 29870656 - 29870619
Alignment:
Q  184 ccagagtacatgaaagatattttactgctcaacctaag 221  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  29870656 ccagagtacatgaaagatattttactgttcatcctaag 29870619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 26705961 - 26705914
Alignment:
Q  2 ggaaccggggaggattgggacaagatagctcatattccaaaaataaag 49  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26705961 ggaacaggggaggattgggacaagatagctcatattccaaaaataaag 26705914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 26705782 - 26705690
Alignment:
Q  129 atttttattcaaaaatctttatatt--ttctcattgttgacttcttcagaaagagcaccaga----gtacatgaaagatattttactgctcaa 215  Q
    ||||| |||||||||||||| |||   |||||||| ||| ||||||||||||||||   |||    |||||||||||||||||||||| ||||    
T  26705782 attttaattcaaaaatctttttatacattctcattcttggcttcttcagaaagagctgtagagtacgtacatgaaagatattttactgttcaa 26705690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 20298152 - 20298194
Alignment:
Q  2 ggaaccggggaggattgggacaagatagctcatattccaaaaa 44  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  20298152 ggaacaggggaggattgggacaagatagctcatattccaaaaa 20298194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University