View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11741_low_1 (Length: 601)
Name: NF11741_low_1
Description: NF11741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11741_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 11592875 - 11593291
Alignment:
| Q |
1 |
tttctgaagctttatcctttgctttctccattacatgtttgcatttaccatatgcatcacaaataagctctttagcatctctagcattaggagtatgaag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
11592875 |
tttctgaggctttatcctttgctttctccatcacatgtttgcatttaccatatgcatcacaaataagctctttagcatttttggcattaggagtatgaag |
11592974 |
T |
|
| Q |
101 |
attataatgtgatgaagatgcatcatgtgaaattccttgacccatgtttggtagaacagaagcagcttctttgattctatctttggtgttttctatgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11592975 |
attataatgtgatgaagatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaa |
11593074 |
T |
|
| Q |
201 |
ccagaatccatgttggtgtaatcttgttgatgggtttgttgttgttcaggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11593075 |
ccagaatccatgttggtgtaatcttgttgatgggtttgttgttgttcaggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaa |
11593174 |
T |
|
| Q |
301 |
caacaactttgtgtccttctttgacgattgtgtttggttgttgttttggatttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaa |
400 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11593175 |
caacaactttgtgaccttctttgacaattgtgtttggttgttgttttggatttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaa |
11593274 |
T |
|
| Q |
401 |
agctaaaaggttcatca |
417 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11593275 |
agctaaaaggttcatca |
11593291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 11645244 - 11644828
Alignment:
| Q |
1 |
tttctgaagctttatcctttgctttctccattacatgtttgcatttaccatatgcatcacaaataagctctttagcatctctagcattaggagtatgaag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
11645244 |
tttctgaggctttatcctttgctttctccatcacatgtttgcatttaccatatgcatcacaaataagctctttagcatttttggcattaggagtatgaag |
11645145 |
T |
|
| Q |
101 |
attataatgtgatgaagatgcatcatgtgaaattccttgacccatgtttggtagaacagaagcagcttctttgattctatctttggtgttttctatgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11645144 |
attataatgtgatgaagatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaa |
11645045 |
T |
|
| Q |
201 |
ccagaatccatgttggtgtaatcttgttgatgggtttgttgttgttcaggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11645044 |
ccagaatccatgttggtgtaatcttgttgatgggtttgttgttgttcaggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaa |
11644945 |
T |
|
| Q |
301 |
caacaactttgtgtccttctttgacgattgtgtttggttgttgttttggatttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaa |
400 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11644944 |
caacaactttgtgaccttctttgacaattgtgtttggttgttgttttggatttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaa |
11644845 |
T |
|
| Q |
401 |
agctaaaaggttcatca |
417 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11644844 |
agctaaaaggttcatca |
11644828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 506 - 588
Target Start/End: Complemental strand, 11644739 - 11644657
Alignment:
| Q |
506 |
aggattgtgttgtggtaagaatgaagagtgtaacaacgttgtttgtgttgtgccgagttgttcggttttatttgttgagttct |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11644739 |
aggattgtgttgtggtaagaatgaagagtgtaacaaagttgtttgtgttgtgccgagttgttcggttttatttgttgagttct |
11644657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 522 - 588
Target Start/End: Original strand, 11593404 - 11593466
Alignment:
| Q |
522 |
aagaatgaagagtgtaacaacgttgtttgtgttgtgccgagttgttcggttttatttgttgagttct |
588 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
11593404 |
aagaatgatgagtgtaacaa---tgtttgtgttgtgccgaattgtttggtttta-ttgttgagttct |
11593466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 37180730 - 37180666
Alignment:
| Q |
9 |
gctttatcctttgctttctccattacatgtttgcatttaccatatgcatcacaaataagctcttt |
73 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37180730 |
gctttatcctttgctttctccattgcgtgtttgcatttaccatatgcatcacaaataagctcttt |
37180666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 34705153 - 34705219
Alignment:
| Q |
351 |
tttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaaaaggttcatca |
417 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
34705153 |
tttggagagaaaatgcttgctgctgtgagtgaagttactaacaggctcaaagctaaaatgttcatca |
34705219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 31069361 - 31069243
Alignment:
| Q |
116 |
agatgcatcatgtgaaattccttgacccatgtttggtagaacagaagcagcttctttgattctatctttggtgttttctatgaaaccagaatccatgttg |
215 |
Q |
| |
|
||||| ||| ||||| ||||||||||| || ||||| ||||| |||||| |||||| ||| | |||| ||||||||||||||||| ||||| || ||| |
|
|
| T |
31069361 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
31069263 |
T |
|
| Q |
216 |
gtgtaatcttgttgatgggt |
235 |
Q |
| |
|
||| |||| | ||||||||| |
|
|
| T |
31069262 |
gtgaaatcatcttgatgggt |
31069243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 39126987 - 39126935
Alignment:
| Q |
249 |
ggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaaca |
302 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||| || |||||||||||| |
|
|
| T |
39126987 |
ggtaagattgagattt-ggtgctttggtaactatcttggtcgtattcaacaaca |
39126935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University