View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11741_low_13 (Length: 258)

Name: NF11741_low_13
Description: NF11741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11741_low_13
NF11741_low_13
[»] chr5 (5 HSPs)
chr5 (14-258)||(36202784-36203029)
chr5 (93-258)||(29006218-29006385)
chr5 (97-253)||(11042983-11043139)
chr5 (164-254)||(9851650-9851740)
chr5 (177-234)||(15205199-15205256)
[»] chr8 (2 HSPs)
chr8 (89-254)||(12729135-12729300)
chr8 (95-258)||(28696287-28696450)
[»] chr3 (7 HSPs)
chr3 (94-257)||(52653523-52653686)
chr3 (94-234)||(50914636-50914776)
chr3 (163-258)||(16729628-16729721)
chr3 (97-258)||(33709572-33709727)
chr3 (95-161)||(2257455-2257521)
chr3 (92-141)||(23686022-23686071)
chr3 (92-141)||(24058259-24058308)
[»] chr2 (2 HSPs)
chr2 (92-258)||(34681303-34681469)
chr2 (114-258)||(14219090-14219233)
[»] chr4 (8 HSPs)
chr4 (94-258)||(24129546-24129710)
chr4 (95-258)||(20251147-20251309)
chr4 (100-258)||(48780065-48780222)
chr4 (124-258)||(1494976-1495110)
chr4 (128-255)||(1516538-1516664)
chr4 (95-188)||(122829-122922)
chr4 (185-258)||(1533061-1533134)
chr4 (124-171)||(1533134-1533180)
[»] chr7 (5 HSPs)
chr7 (100-258)||(12239826-12239983)
chr7 (88-258)||(1840394-1840565)
chr7 (123-203)||(34091727-34091806)
chr7 (150-213)||(24533212-24533275)
chr7 (113-258)||(24870206-24870350)
[»] chr6 (1 HSPs)
chr6 (97-258)||(28612349-28612508)
[»] scaffold0007 (2 HSPs)
scaffold0007 (93-258)||(217508-217665)
scaffold0007 (100-257)||(215646-215801)
[»] chr1 (5 HSPs)
chr1 (94-167)||(49053554-49053627)
chr1 (93-155)||(49061133-49061195)
chr1 (165-258)||(17458239-17458332)
chr1 (110-258)||(50059269-50059416)
chr1 (185-250)||(49053631-49053696)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 36202784 - 36203029
Alignment:
Q  14 cacagaaatga-atctcctttatatgcaattgaacgcataagaaaattgtacaaacagacacatgaacattggtgtattaattgtgagagaaattttcaa 112  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  36202784 cacagaaatgacatctcctttatatacaattgaacacataagaaaatcgtacaaccagacacatgaacattggtgtattaattgtgagagaaatttttaa 36202883  T
Q  113 aatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactctt 212  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36202884 aatatatttgaaaagttgcaatggttaaaaagagaccttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaaccattcatgaacaaactctt 36202983  T
Q  213 ttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||    
T  36202984 ttaaagggttatttctcttcaccaaatgacataagtttctctataa 36203029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 93 - 258
Target Start/End: Original strand, 29006218 - 29006385
Alignment:
Q  93 attgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaa---agtgtaatgcttgacaattgaatcaatg 189  Q
    |||||||||||||||| ||||||||| || ||||||||||||  |||||| |||| |||||||| ||||   ||||||||| || || |||||| |||||    
T  29006218 attgtgagagaaatttccaaaatataattgaaaagttgcaataattaaaa-gagatcttttagaaaaaaaaaagtgtaatgttttacgattgaagcaatg 29006316  T
Q  190 taatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    ||| |||||||||||||| ||||||||  |||| |||| ||||||||||||||||||||||||||||||    
T  29006317 taaccattcatgaacaaaatcttttaaagggttgtttcccttcaccaaatgacataagtttctctataa 29006385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 253
Target Start/End: Complemental strand, 11043139 - 11042983
Alignment:
Q  97 tgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcat 196  Q
    |||| |||||||||||||||||||| ||||||| ||  ||||||| | ||| ||||||||||||| |||||||| ||| | ||| ||||||| ||  |||    
T  11043139 tgagtgaaattttcaaaatatatttgaaaagtttcatcggttaaataaagatcttttagagaaaaggtgtaatgtttgtccatttaatcaatctagccat 11043040  T
Q  197 tcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctc 253  Q
    ||||||||||||||||| ||  ||||  || ||| ||||||| ||||| ||||||||    
T  11043039 tcatgaacaaactctttcaaagggttgattatctacaccaaaggacatgagtttctc 11042983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 9851740 - 9851650
Alignment:
Q  164 tgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctct 254  Q
    |||| ||||||||||||||| |||| | | ||||||| |||||||||| | ||  |||||||||||||||||||| |||||||||||||||    
T  9851740 tgtattgcttgacaattgaagcaatctgaccattcataaacaaactctgtcaaatggttatttctcttcaccaaaagacataagtttctct 9851650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 15205199 - 15205256
Alignment:
Q  177 aattgaatcaatgtaatcattcatgaacaaactcttttaataggttatttctcttcac 234  Q
    ||||||| ||||||||||||||||||||||||||||  ||  |||||||||| |||||    
T  15205199 aattgaagcaatgtaatcattcatgaacaaactcttacaaatggttatttctattcac 15205256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 89 - 254
Target Start/End: Original strand, 12729135 - 12729300
Alignment:
Q  89 attaattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaat 188  Q
    |||| ||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| ||||    
T  12729135 attatttgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaatagagaccttttagagaaaaggtgtaatgctcgacaattgaagcaat 12729234  T
Q  189 gtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctct 254  Q
     ||| ||||||||| ||||||||| |||   ||| ||||||||||||| | ||||||| |||||||    
T  12729235 ataaccattcatgagcaaactcttctaaagagttgtttctcttcaccacaggacataaatttctct 12729300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 258
Target Start/End: Complemental strand, 28696450 - 28696287
Alignment:
Q  95 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatc 194  Q
    |||||||| |||||| ||||||| |   |||||||||||||| |||| ||||| ||||||||||||| ||||||||||| ||||||||| |||||||| |    
T  28696450 tgtgagagtaatttttaaaatatttcgaaaaagttgcaatgggtaaatagagatcttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaacc 28696351  T
Q  195 attcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    |||||||||||||||||| |||  || | |||||||||||||||  ||||||||||||| ||||    
T  28696350 attcatgaacaaactcttctaaagggatgtttctcttcaccaaagaacataagtttctccataa 28696287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 94 - 257
Target Start/End: Original strand, 52653523 - 52653686
Alignment:
Q  94 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaat 193  Q
    ||||||||||||||| ||||||||||||  |||||||||||| ||||| | | ||||||||| ||||| ||||| || |||||||||||  ||||||||     
T  52653523 ttgtgagagaaatttccaaaatatatttggaaagttgcaatgattaaataaataccttttagtgaaaaggtgtattgtttgacaattgatgcaatgtaac 52653622  T
Q  194 cattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctata 257  Q
    |||||||||||||||||||||||  |||| | ||||||||||||| |||| |||||||||||||    
T  52653623 cattcatgaacaaactcttttaaatggttgtgtctcttcaccaaaggacacaagtttctctata 52653686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 50914776 - 50914636
Alignment:
Q  94 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaat 193  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||||| ||     
T  50914776 ttgttagagaaattttcaaaatatatttgaaaagttgcaatggttaaatagagaccttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaac 50914677  T
Q  194 cattcatg-aacaaactcttttaataggttatttctcttcac 234  Q
    |||||||| |||||||||||  || ||||| |||||||||||    
T  50914676 cattcatgaaacaaactcttccaa-aggttttttctcttcac 50914636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 16729628 - 16729721
Alignment:
Q  163 gtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    ||||||| |||||| |||||| ||||||||| ||||||||| |||||||||||| | ||| ||||||||||||||| ||||| | |||||||||||    
T  16729628 gtgtaatacttgactattgaagcaatgtaataattcatgaagaaactcttttaaga-gttgtttctcttcaccaaaagacat-actttctctataa 16729721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 258
Target Start/End: Original strand, 33709572 - 33709727
Alignment:
Q  97 tgagagaaattttcaaaata---tatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaa--gtgtaatgcttgacaattgaatcaatgta 191  Q
    |||||||||||| |||||||   |||||  ||||||||||||||||||| ||||||||||| | |||||  ||||||||||| ||||||||| |||||||    
T  33709572 tgagagaaatttccaaaataatatatttggaaagttgcaatggttaaaa-gagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaatgta 33709670  T
Q  192 atcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
              |||||| ||||| ||  |||| |||| |||||||||| |||||||||||||||||||    
T  33709671 ----------aacaaaatctttcaaagggttctttcccttcaccaaaggacataagtttctctataa 33709727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 2257521 - 2257455
Alignment:
Q  95 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaa 161  Q
    ||||| ||||||||  ||||||||||| ||||||||||||| ||||| ||||||| |||||||||||    
T  2257521 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccatttagagaaaa 2257455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 23686022 - 23686071
Alignment:
Q  92 aattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaa 141  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  23686022 aattgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaa 23686071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 24058259 - 24058308
Alignment:
Q  92 aattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaa 141  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  24058259 aattgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaa 24058308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 258
Target Start/End: Complemental strand, 34681469 - 34681303
Alignment:
Q  92 aattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgta 191  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||| | | |||||||||||||||||||||||| |||||||||||| ||||||     
T  34681469 aattgtgagagaaattttcaaaatatatttggaatgttgcaatggttaaacataaaccttttagagaaaaagtgtaatgtttgacaattgaagcaatgtt 34681370  T
Q  192 atcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    | |||| ||||||||||||||  ||   ||| ||| ||||| ||||| ||||||| |||||||||||    
T  34681369 accattgatgaacaaactcttcaaaagagttgtttttcttccccaaaagacataaatttctctataa 34681303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 258
Target Start/End: Complemental strand, 14219233 - 14219090
Alignment:
Q  114 atatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttt 213  Q
    |||||||| ||| |||||||| |||||| ||| | |||| |||||||| ||| ||||||| ||||||||| ||||||||||  |||||||| ||||||||    
T  14219233 atatatttgaaatgttgcaatagttaaatagaaatcttt-agagaaaatgtgcaatgctttacaattgaagcaatgtaatcggtcatgaaccaactcttt 14219135  T
Q  214 taataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
     ||   ||| ||||||||||||||||| |||||||||||||||||    
T  14219134 caaagtgttgtttctcttcaccaaatggcataagtttctctataa 14219090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 94 - 258
Target Start/End: Complemental strand, 24129710 - 24129546
Alignment:
Q  94 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaat 193  Q
    |||||||||||||| |||||||||||||  ||||| |||||||||||| | || | |||| ||| ||| ||||| ||||||| ||||||| ||||||||     
T  24129710 ttgtgagagaaattatcaaaatatatttagaaagtcgcaatggttaaatataggctttttggaggaaaggtgtattgcttgataattgaagcaatgtaac 24129611  T
Q  194 cattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    |||||||||||||||||||  ||  ||||||||  ||| ||||||||||||||||||||||||||    
T  24129610 cattcatgaacaaactcttccaaatggttattttccttaaccaaatgacataagtttctctataa 24129546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 95 - 258
Target Start/End: Original strand, 20251147 - 20251309
Alignment:
Q  95 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatc 194  Q
    ||||||||||||||| |||||||||||  ||||||||||| |||||| ||||| ||||||||||||||||||| || |||| ||||||| ||||||||      
T  20251147 tgtgagagaaatttttaaaatatatttggaaagttgcaattgttaaatagagatcttttagagaaaaagtgtattgtttgataattgaaacaatgtaact 20251246  T
Q  195 attcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    |||||||||| |||||| ||||   ||| ||| |||| |||||| |||||||||||||||||||    
T  20251247 attcatgaac-aactctcttaaatagttgtttttctttaccaaaggacataagtttctctataa 20251309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 258
Target Start/End: Complemental strand, 48780222 - 48780065
Alignment:
Q  100 gagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattca 199  Q
    ||||||||||||||||||||||  |||||||||||| ||||| | ||| ||||||||||||| || ||||| |||||||||||| |||| |||  |||||    
T  48780222 gagaaattttcaaaatatatttggaaagttgcaatgattaaaca-agatcttttagagaaaaggtataatgtttgacaattgaagcaatataactattca 48780124  T
Q  200 tgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    |||| ||| |||||| | ||||| ||||||| ||||||| ||| | ||||| |||||||    
T  48780123 tgaataaattcttttcaaaggttgtttctctacaccaaaagacttgagtttatctataa 48780065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 258
Target Start/End: Complemental strand, 1495110 - 1494976
Alignment:
Q  124 aaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttttaataggtta 223  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||| |||| ||| ||||| |||| ||| |||||||||||||| |  ||| | |||||     
T  1495110 aaagttgcaatggttaaaa-gagaccatttagagaaaaggtgtaaagctttacagttgaagcaatataaccattcatgaacaaaattctttcaaaggttt 1495012  T
Q  224 -tttctcttcaccaaatgacataagtttctctataa 258  Q
     ||||  |||||||||||||||||||||||||||||    
T  1495011 gtttccgttcaccaaatgacataagtttctctataa 1494976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 255
Target Start/End: Complemental strand, 1516664 - 1516538
Alignment:
Q  128 ttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttttaataggttatttc 227  Q
    ||||||||||||||| ||||| |||||||||||| ||||| ||||| | || |||  |||| ||| |||||||||||||| ||||| ||  |||||||||    
T  1516664 ttgcaatggttaaaa-gagacattttagagaaaaggtgtagtgctttagaaatgacgcaatataaccattcatgaacaaaatctttcaaagggttatttc 1516566  T
Q  228 tcttcaccaaatgacataagtttctcta 255  Q
      ||||||||||||||||||||||||||    
T  1516565 cgttcaccaaatgacataagtttctcta 1516538  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 122829 - 122922
Alignment:
Q  95 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaat 188  Q
    |||||||||||||| |||| ||||||| |||||||||||| |||||| ||| || |||||||||||| ||||| ||||||||||||||| ||||    
T  122829 tgtgagagaaatttccaaagtatatttgaaaagttgcaatagttaaatagaaacattttagagaaaatgtgtattgcttgacaattgaaacaat 122922  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 1533134 - 1533061
Alignment:
Q  185 caatgtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    |||| ||| |||| ||||||||| ||||| ||  |||| |||| ||||| ||||||||||||||||||||||||    
T  1533134 caatataaccatttatgaacaaaatctttcaaagggttgtttcccttcatcaaatgacataagtttctctataa 1533061  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 1533180 - 1533134
Alignment:
Q  124 aaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgc 171  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||||||    
T  1533180 aaagttgcaatggttaaaa-gagacctattagagaaaaggtgtaatgc 1533134  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 258
Target Start/End: Complemental strand, 12239983 - 12239826
Alignment:
Q  100 gagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattca 199  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||  |||||||| ||||||    
T  12239983 gagaaatttccaaaatatatttgaaa-gttgcaatggttaaagaaagaccttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattca 12239885  T
Q  200 tgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    |||||||||||||| ||  ||||    ||||| | |||| || ||||||||||||||||    
T  12239884 tgaacaaactctttcaaatggttgcggctcttgatcaaaggatataagtttctctataa 12239826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 258
Target Start/End: Original strand, 1840394 - 1840565
Alignment:
Q  88 tattaattgtgagagaaattttcaaaatat--atttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatc 185  Q
    ||||||||||||||| |||||| |||||||  |||| |||||||||||||||| || |||||||||||||  |||  ||||||| ||||| |||| ||      
T  1840394 tattaattgtgagagtaatttttaaaatataaatttgaaaagttgcaatggtt-aagagagaccttttag-taaatggtgtaattcttgataattcaagt 1840491  T
Q  186 aatgtaatcattcatgaacaaactcttttaataggttatttctcttca-ccaaatgacataagtttctctataa 258  Q
    | ||||| |||||||||||||| |||| ||| | ||| | | |||||| | ||| |||||||||||||||||||    
T  1840492 attgtaaccattcatgaacaaattcttctaaaaagttgtctttcttcatcaaaaggacataagtttctctataa 1840565  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 34091806 - 34091727
Alignment:
Q  123 aaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaa 203  Q
    ||||||| ||||||||||| | |||||||||| | |||| |||||||| |||| |||||||  | ||||||||||||||||    
T  34091806 aaaagttacaatggttaaataaagaccttttaaa-aaaatgtgtaatgtttgataattgaagtagtgtaatcattcatgaa 34091727  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 24533212 - 24533275
Alignment:
Q  150 ttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttt 213  Q
    ||||||||||||  ||||||| || ||||||| | |||||||| ||||||||||||||| ||||    
T  24533212 ttttagagaaaatatgtaatgtttaacaattgtagcaatgtaaccattcatgaacaaacacttt 24533275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 258
Target Start/End: Original strand, 24870206 - 24870350
Alignment:
Q  113 aatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactctt 212  Q
    |||| |||| |||||||||||| |||||||  ||||||||||| ||||  ||||||||| |||  | |||| || | ||| | || || |||||||||||    
T  24870206 aataaatttgaaaagttgcaatagttaaaat-agaccttttagtgaaagggtgtaatgcgtgatcaatgaagcagtctaaccgtttattaacaaactctt 24870304  T
Q  213 ttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
     |||   |||||||||||||||   | ||||||| |||||||||||    
T  24870305 ctaaatagttatttctcttcactgtaagacataattttctctataa 24870350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 258
Target Start/End: Complemental strand, 28612508 - 28612349
Alignment:
Q  97 tgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcat 196  Q
    |||||||||||| |||||||||||| |||  ||| |||||||||| |||| |||||||||| ||| ||||| || |||||||||||| |||| |||  ||    
T  28612508 tgagagaaatttccaaaatatatttaaaa--ttgtaatggttaaatagaggccttttagagcaaaggtgtattgtttgacaattgaagcaatataacaat 28612411  T
Q  197 tcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    ||||||||||||||||  ||  | || ||| ||||||||||||||||||||||||| |||||    
T  28612410 tcatgaacaaactcttccaaatgattgtttttcttcaccaaatgacataagtttctttataa 28612349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 258
Target Start/End: Original strand, 217508 - 217665
Alignment:
Q  93 attgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaa 192  Q
    |||||||||||||||| | ||||||| |  ||||||||||||||||||| ||||| ||||||||||||| | ||||| |||||||||  || ||          
T  217508 attgtgagagaaatttccgaaatataataaaaaagttgcaatggttaaatagagatcttttagagaaaatgcgtaattcttgacaatcaaagca------ 217601  T
Q  193 tcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
      ||||||| ||||||||||| || ||||| ||| |||| ||||||||||||||||||||||||||    
T  217602 --attcatggacaaactctttcaaaaggttgtttatctttaccaaatgacataagtttctctataa 217665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 215646 - 215801
Alignment:
Q  100 gagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattca 199  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||||| |||||  ||||||  ||||||| ||||| ||||||    ||||| ||||||    
T  215646 gagaaatttccaaaatatatttagaaagttgcaatggttaaatagagatcttttgaagaaaatatgtaatgtttgacgattgaa--gttgtaaccattca 215743  T
Q  200 tgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctata 257  Q
    | ||||||  | |||||  ||| |||||||||||||||| ||||||||||| ||||||    
T  215744 taaacaaatccatttaaagggtcatttctcttcaccaaaggacataagtttttctata 215801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 49053554 - 49053627
Alignment:
Q  94 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgta 167  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||| | ||||||||||| ||||| |||||    
T  49053554 ttgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagaccttttagtgaaaaggtgta 49053627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 49061133 - 49061195
Alignment:
Q  93 attgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagagaccttttag 155  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||| | |||||||||||    
T  49061133 attgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagaccttttag 49061195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 258
Target Start/End: Original strand, 17458239 - 17458332
Alignment:
Q  165 gtaatgcttgacaattgaatcaatgtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    |||||| ||||||||| |  |||||||| |||||| ||||||| ||||| ||   ||| ||||||||||||||| ||||||||||| |||||||    
T  17458239 gtaatgtttgacaattcatgcaatgtaaccattcaagaacaaattctttcaagtagttgtttctcttcaccaaaggacataagtttatctataa 17458332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 258
Target Start/End: Original strand, 50059269 - 50059416
Alignment:
Q  110 caaaatatatttcaaaagttgcaatggttaaaaagagaccttttagagaaaaagtgtaatgcttgacaattgaatcaatgtaatcattcatgaacaaact 209  Q
    |||||||||||| |||| ||||| | |||||| |||||| || ||| ||| | |||||||||||||  ||  || |||||||| ||||| | ||||| ||    
T  50059269 caaaatatatttaaaaaattgcagtcgttaaatagagacattatagtgaagaggtgtaatgcttgaacatcaaagcaatgtaaccattcgtaaacaagct 50059368  T
Q  210 cttttaataggttatttctcttcaccaaatgacataagtttctctataa 258  Q
    ||||||| | | | ||||| ||||| ||| |||||||| || |||||||    
T  50059369 cttttaaaaag-tgtttctgttcactaaaagacataagattttctataa 50059416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 49053631 - 49053696
Alignment:
Q  185 caatgtaatcattcatgaacaaactcttttaataggttatttctcttcaccaaatgacataagttt 250  Q
    |||||||| ||||||| |||||||||||| ||  | || | ||||||||||||| |||||||||||    
T  49053631 caatgtaaccattcataaacaaactctttcaaatgattgtgtctcttcaccaaaggacataagttt 49053696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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