View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11741_low_15 (Length: 250)
Name: NF11741_low_15
Description: NF11741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11741_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 5831140 - 5831304
Alignment:
| Q |
1 |
gcttccaaaatgatgaaatgcgaagtttgtaaggtggtttagatggaaaatcaagtatattttaagggttttagatca-ttttttaatcaatttgttaaa |
99 |
Q |
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| T |
5831140 |
gcttccaaaatggtgaaatgcgaagtttgtaaggtggtttagatggaaaatcaagtatattttaagggttttagatcatttttttaatcaatttgttaaa |
5831239 |
T |
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| Q |
100 |
gggaaatgtaaaatgatcagccaaaaagttgtccacaccgtatattaatacgatttgttatacaa |
164 |
Q |
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| T |
5831240 |
gggaaatgtaaaatgaacagccaaaaagttgtccacaccgtatattaatacggtttgttatacaa |
5831304 |
T |
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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 5831393 - 5831439
Alignment:
| Q |
162 |
caatataacattactcaaaattaaaacaaaaccaatttaatcacatc |
208 |
Q |
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| T |
5831393 |
caatataacattactcaaaattaaaacaaaaccaatttaatcacatc |
5831439 |
T |
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