View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11741_low_16 (Length: 234)
Name: NF11741_low_16
Description: NF11741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11741_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 31498118 - 31497931
Alignment:
| Q |
1 |
tacataaaaggatattcatgccactcaaaatatcttcatttgttggaaagacaactgaggctgcctgaaatatccacatcctcaatgatgagcaatctaa |
100 |
Q |
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| T |
31498118 |
tacatgaaaggatattcatgccactcaaaatatcttaatttgttggaaagacaactgaggctgcctgaaatatccacatcctcaatgatgagcaatctaa |
31498019 |
T |
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| Q |
101 |
gatttgagaagtgtttgaatatcgccacatccatctcttcaccttcaattcttatttcgctatccaaaaccatggcttcaacatactt |
188 |
Q |
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| T |
31498018 |
gacttgagaagcgtttgaatatcgcctcatccatctcttcaccgtcaattcttatttcgctatccaaaaccatggcttcaacatactt |
31497931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 31562029 - 31561982
Alignment:
| Q |
7 |
aaaggatattcatgccactcaaaatatcttcatttgttggaaagacaa |
54 |
Q |
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| T |
31562029 |
aaaggatattcaagccactcaacatatcttaatttgttcgaaagacaa |
31561982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 33263505 - 33263570
Alignment:
| Q |
8 |
aaggatattcatgccactcaaaatatcttcatttgttggaaagacaactgaggctgcctgaaatat |
73 |
Q |
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|||||||||||| |||||||| |||||| ||||||| ||||||||||| |||| ||||| |||| |
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| T |
33263505 |
aaggatattcatcccactcaacatatctcaatttgtttgaaagacaacttgggcttcctgagatat |
33263570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 17440043 - 17439994
Alignment:
| Q |
7 |
aaaggatattcatgccactcaaaatatcttcatttgttggaaagacaact |
56 |
Q |
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|||||||||| | ||||||||| ||||||| ||||||| ||||||||||| |
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| T |
17440043 |
aaaggatatttaggccactcaacatatcttaatttgttcgaaagacaact |
17439994 |
T |
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