View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11741_low_2 (Length: 439)

Name: NF11741_low_2
Description: NF11741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11741_low_2
NF11741_low_2
[»] chr5 (9 HSPs)
chr5 (13-425)||(36203066-36203467)
chr5 (155-317)||(9851258-9851410)
chr5 (246-303)||(2022648-2022705)
chr5 (246-309)||(43378120-43378183)
chr5 (13-157)||(29006459-29006603)
chr5 (13-141)||(9851458-9851585)
chr5 (155-247)||(15205483-15205575)
chr5 (181-268)||(29006661-29006747)
chr5 (84-152)||(9080655-9080724)
[»] chr3 (6 HSPs)
chr3 (13-155)||(33709804-33709945)
chr3 (1-162)||(52653736-52653896)
chr3 (155-317)||(52653924-52654077)
chr3 (13-152)||(40574317-40574456)
chr3 (155-317)||(33709981-33710131)
chr3 (254-308)||(16729926-16729980)
[»] chr1 (11 HSPs)
chr1 (33-151)||(49053788-49053905)
chr1 (21-157)||(49061355-49061491)
chr1 (155-247)||(49053944-49054036)
chr1 (155-317)||(49061524-49061676)
chr1 (251-303)||(44524481-44524533)
chr1 (246-303)||(21432123-21432180)
chr1 (246-294)||(48366509-48366557)
chr1 (260-317)||(35624691-35624749)
chr1 (251-303)||(10187039-10187091)
chr1 (246-294)||(29681289-29681337)
chr1 (246-317)||(19310523-19310595)
[»] chr8 (6 HSPs)
chr8 (20-151)||(12729372-12729502)
chr8 (155-303)||(28695947-28696085)
chr8 (155-235)||(12729541-12729621)
chr8 (155-317)||(44729228-44729385)
chr8 (270-322)||(12729637-12729690)
chr8 (246-303)||(25953617-25953674)
[»] scaffold0007 (1 HSPs)
scaffold0007 (21-151)||(217731-217861)
[»] chr7 (5 HSPs)
chr7 (155-247)||(12239497-12239590)
chr7 (21-151)||(12239628-12239757)
chr7 (254-317)||(37469116-37469180)
chr7 (155-317)||(24870567-24870720)
chr7 (246-294)||(5436988-5437036)
[»] chr6 (6 HSPs)
chr6 (255-317)||(24075621-24075684)
chr6 (69-151)||(11931984-11932066)
chr6 (13-157)||(28612144-28612288)
chr6 (155-238)||(11932104-11932187)
chr6 (246-297)||(28611983-28612034)
chr6 (251-303)||(24509291-24509343)
[»] chr2 (4 HSPs)
chr2 (251-309)||(42779878-42779936)
chr2 (251-304)||(16272130-16272183)
chr2 (251-309)||(716045-716102)
chr2 (69-140)||(34681118-34681190)
[»] chr4 (11 HSPs)
chr4 (246-303)||(3415610-3415667)
chr4 (254-314)||(3425166-3425227)
chr4 (246-308)||(18670524-18670587)
chr4 (69-152)||(20251439-20251523)
chr4 (251-317)||(20251646-20251712)
chr4 (246-303)||(18736848-18736905)
chr4 (34-157)||(24391830-24391951)
chr4 (246-305)||(30020308-30020367)
chr4 (255-305)||(47071118-47071168)
chr4 (246-303)||(18716175-18716232)
chr4 (182-247)||(48779734-48779799)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 36203066 - 36203467
Alignment:
Q  13 tgagtctaaattctgccgataattatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgtaagctaccattgtc 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      
T  36203066 tgagtctaaattctgccgaaaattatactaaattattcgttctcttctttagt-gtacgagagaatttgtcagaactttattttgtaagctaccattgca 36203164  T
Q  113 gatacacttgatgtgaacgtgcaagtcacgtcaaggattctattgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggccc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||    
T  36203165 gatacacttgatgtgaacgtgcaagtcacgtcaaggattctattgcatccggttggcataactggtggggacgaatcgaacttaaaggttagtgtggccc 36203264  T
Q  213 acacacgccatggaatttatgtgcacaattcatcacaattcatcatgttcatctttatcatcttcttgatgaagttattgcagcagaccccaacacaggt 312  Q
    |||||||||||| ||||||||||          |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||    
T  36203265 acacacgccatgaaatttatgtg----------cacaattcattatgttcatcttcatcatcttcttgatgaagttattacagcagaccccaacataggt 36203354  T
Q  313 tctaaaattaatattgatttctttcgtttgtggcttcccggttctttatttttcatatttcataaaaacttgtgaaggtcatataaatcatagatatata 412  Q
    ||| | |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36203355 tctgacattaatattattttctttcgtttgtggcttcctggttctttatttttcatatttcataaaaacttgtgaaggtcatataaatcatagatatata 36203454  T
Q  413 tttatcatttatc 425  Q
    |||||||||||||    
T  36203455 tttatcatttatc 36203467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 155 - 317
Target Start/End: Complemental strand, 9851410 - 9851258
Alignment:
Q  155 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatcacaattca 254  Q
    |||||| ||||| || |||||||| |||| |||| |||| |||| ||||||||| |||||||||||  |||||||||||||||||||||||||           
T  9851410 ttgcattcggttggcttaactggt-agggagaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatca------- 9851319  T
Q  255 tcatgttcatctttatcatcttcttgatgaagttattgcagcagacc-ccaacacaggttctaa 317  Q
       |||||||||| |||||||| ||||| |||||||||||||||||| || ||||| |||||||    
T  9851318 ---tgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatgttctaa 9851258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 2022705 - 2022648
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgcagcagacccc 303  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  2022705 cacatttcatcatgttcatcttcatcatcttcttgatcaagttattgcagcagacccc 2022648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 43378183 - 43378120
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgcagcagaccccaacaca 309  Q
    |||| |||||||| |||||||| ||||||||| || | ||||||||||||||||||||||||||    
T  43378183 cacacttcatcatattcatcttcatcatcttcatggtcaagttattgcagcagaccccaacaca 43378120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 29006459 - 29006603
Alignment:
Q  13 tgagtctaaattctgccgataattatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgt-aagctaccattgt 111  Q
    ||||||||||||||||  | ||||||||||||| |||| |||| || | ||| || |||||| || ||| |||||||||||| ||| || ||| |||||     
T  29006459 tgagtctaaattctgctaaaaattatactaaatcattcattcttttttctag-tgcacgagataagttgacagaactttattctgtaaaactaacattga 29006557  T
Q  112 cgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattg 157  Q
    |||||| |||| |||||| ||| | |||| ||||||||||| ||||    
T  29006558 cgatacgcttggtgtgaatgtgtatgtcatgtcaaggattccattg 29006603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 9851585 - 9851458
Alignment:
Q  13 tgagtctaaattctgccgataattatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgtaagctaccattgtc 112  Q
    |||||| |||||||||| | ||| ||||||||| | || |||| |||| |||| | || ||||||| || || ||||||||| |||||   |||||||||    
T  9851585 tgagtcaaaattctgccaaaaataatactaaatcagtctttcttttctctagt-gcacaagagaatgtgacaaaactttattctgtaaaacaccattgtc 9851487  T
Q  113 gatacacttgatgtgaacgtgcaagtcac 141  Q
    ||||| |||| |||||| |||||| ||||    
T  9851486 gatacgcttggtgtgaatgtgcaaatcac 9851458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 15205483 - 15205575
Alignment:
Q  155 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatca 247  Q
    |||||||| ||  |||||||||||| || |||||||||| | || ||||||||| |||||||||||  || |||||||| ||||  |||||||    
T  15205483 ttgcatccagtcggcataactggtggggacgaatcgaacctcaaagttagtgtgtcccacacacgctttgaaatttatgggcactcttcatca 15205575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 29006661 - 29006747
Alignment:
Q  181 gggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatcacaattcatcatgttcatcttt 268  Q
    ||||||||||||| |||| ||||||||| | |||||||||  || |||||||||||||  |||||||  ||||||| || ||||||||    
T  29006661 gggcgaatcgaacctaaaagttagtgtgtctcacacacgctttgaaatttatgtgcactcttcatca-tattcatcttgatcatcttt 29006747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 9080724 - 9080655
Alignment:
Q  84 agaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattc 152  Q
    ||||||||||||||||| ||||||||| || ||||  || ||||||| |||||||| |||||||| ||||    
T  9080724 agaactttattttgtaaactaccattgatctatacgtttaatgtgaatgtgcaagttacgtcaagaattc 9080655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 33709804 - 33709945
Alignment:
Q  13 tgagtctaaattctgccgataattatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgtaagctaccattgtc 112  Q
    |||||||||||| |||||| ||||||||||||| |||| |||| |||| |||| | || |||||||||| |||||||||||| ||||| |||||||||||    
T  33709804 tgagtctaaattttgccgaaaattatactaaatcattctttcttttctctagt-gcaccagagaatttgacagaactttattctgtaaactaccattgtc 33709902  T
Q  113 gatacacttgatgtgaacgtgcaagtcacgtcaaggattctat 155  Q
    ||||| |||| |||||| |||||||||||||||||||||||||    
T  33709903 gatacgcttggtgtgaatgtgcaagtcacgtcaaggattctat 33709945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 52653736 - 52653896
Alignment:
Q  1 attacatggttttgagtctaaattctgccgataattatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgtaa 100  Q
    ||||||| ||| ||||| |||||||||| || ||||||||||||| |||| | || |||| |||| | |||||  || ||| |||||||||||| |||||    
T  52653736 attacattgttgtgagtttaaattctgctgaaaattatactaaatcattcttacttttctctagt-gcacgaggaaaattgacagaactttattctgtaa 52653834  T
Q  101 gctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattgcatcc 162  Q
     |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  52653835 actaccattgtcgatacacttgatgtgaatgtgcaagtcacgtcaaggattccattgtatcc 52653896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 155 - 317
Target Start/End: Original strand, 52653924 - 52654077
Alignment:
Q  155 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatcacaattca 254  Q
    |||||||||||| ||||||||||||||||||||| |||| |||| ||||||||| |||||||||||  |||||||||||||          |||| ||||    
T  52653924 ttgcatccggttggcataactggtgagggcgaattgaacctaaaggttagtgtgtcccacacacgctttggaatttatgtg----------cacacttca 52654013  T
Q  255 tcatgttcatctttatcatcttcttgatgaagttattgcagcagacccc-aacacaggttctaa 317  Q
    |||||||||| || |||||||||||||| |||||||||| ||| ||||| ||||||||||||||    
T  52654014 tcatgttcattttcatcatcttcttgatcaagttattgccgcaaaccccaaacacaggttctaa 52654077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 40574456 - 40574317
Alignment:
Q  13 tgagtctaaattctgccgataattatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgtaagctaccattg-t 111  Q
    |||||| |||||||||||| ||| ||| ||||| |||| |||| |||| |||| | ||||||||| ||| |||||||||||| ||||| ||| ||||| |    
T  40574456 tgagtcaaaattctgccgaaaataatattaaatcattctttcttttctctagt-gcacgagagaaattgacagaactttattctgtaaactatcattgat 40574358  T
Q  112 cgatacacttgatgtgaacgtgcaagtcacgtcaaggattc 152  Q
     ||||| |||  |||||| |||||||||||||||| |||||    
T  40574357 tgatacgcttcgtgtgaatgtgcaagtcacgtcaaagattc 40574317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 317
Target Start/End: Original strand, 33709981 - 33710131
Alignment:
Q  155 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatcacaattca 254  Q
    ||||||||||||  |||||||||||  || ||||||| | |||| ||||||||| |||||||||||  ||||||||| |||          |||| ||||    
T  33709981 ttgcatccggttgacataactggtggaggtgaatcgatcctaaaggttagtgtgtcccacacacgctttggaattta-gtg----------cacacttca 33710069  T
Q  255 tcatgttcatctttatcatcttcttgatgaagttattgcagcagaccccaacacaggttctaa 317  Q
    |||||||| ||  |||||| |||||| | ||| ||||||||||||||||||||||||||||||    
T  33710070 tcatgttcttc-atatcattttcttggtcaagatattgcagcagaccccaacacaggttctaa 33710131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 16729926 - 16729980
Alignment:
Q  254 atcatgttcatctttatcatcttcttgatgaagttattgcagcagaccccaacac 308  Q
    |||||||||||||| ||| |||| ||||| |||||||||||||||||||| ||||    
T  16729926 atcatgttcatcttcatcttcttattgatcaagttattgcagcagaccccgacac 16729980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 49053788 - 49053905
Alignment:
Q  33 aattatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgt 132  Q
    ||||||||||||| |||| ||||||||| |||| | ||||| ||| ||| |||||||||||||||||| |||||||||||||||  |||| |||||| ||    
T  49053788 aattatactaaatcattctttctcttctctagt-gcacgagggaaattggcagaactttattttgtaaactaccattgtcgatatgcttggtgtgaatgt 49053886  T
Q  133 gcaagtcacgtcaaggatt 151  Q
    |||||||||||||||||||    
T  49053887 gcaagtcacgtcaaggatt 49053905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 49061355 - 49061491
Alignment:
Q  21 aattctgccgataa-ttatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacac 119  Q
    ||||||||||| || ||||||||||| |||| |||| |||| |||| | ||||| ||| ||| || ||||||||| ||||| |||||||||||||||       
T  49061355 aattctgccgaaaaattatactaaatcattctttcttttctctagt-gcacgagggaaattgacaaaactttattctgtaaactaccattgtcgatatgt 49061453  T
Q  120 ttgatgtgaacgtgcaagtcacgtcaaggattctattg 157  Q
    ||| |||||| |||||| ||||||||||||||| ||||    
T  49061454 ttggtgtgaatgtgcaaatcacgtcaaggattccattg 49061491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 49053944 - 49054036
Alignment:
Q  155 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatca 247  Q
    |||||||| ||| | |||||||||| ||||||||||||| |||| ||||||||  |||||||||||  ||||||||||||| ||| |||||||    
T  49053944 ttgcatccagttggtataactggtgggggcgaatcgaacctaaaggttagtgtttcccacacacgcattggaatttatgtgtacacttcatca 49054036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 155 - 317
Target Start/End: Original strand, 49061524 - 49061676
Alignment:
Q  155 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatcacaattca 254  Q
    |||||||  ||| |||||||||||| ||||||||||||| ||||   ||||||  |||||||||||  | ||||||||||||||| ||||              
T  49061524 ttgcatctagttggcataactggtgggggcgaatcgaacctaaagactagtgtttcccacacacgctttagaatttatgtgcacacttca---------- 49061613  T
Q  255 tcatgttcatctttatcatcttcttgatgaagttattgcagcagaccccaacacaggttctaa 317  Q
    |||||||||||||  ||||||| ||| | || ||||||||||||||||||||||| |||||||    
T  49061614 tcatgttcatcttcttcatctttttggtaaaattattgcagcagaccccaacacaagttctaa 49061676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 44524481 - 44524533
Alignment:
Q  251 ttcatcatgttcatctttatcatcttcttgatgaagttattgcagcagacccc 303  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  44524481 ttcatcatgttcatcttcatcatcttcttgatcaagttattgcaacagacccc 44524533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 21432123 - 21432180
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgcagcagacccc 303  Q
    |||| |||| |||||||||||| |||||||||||| | ||||||||||||||||||||    
T  21432123 cacacttcagcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccc 21432180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 48366509 - 48366557
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgca 294  Q
    |||| ||||||||||||||||| |||||||||||||| |||||||||||    
T  48366509 cacacttcatcatgttcatcttcatcatcttcttgatcaagttattgca 48366557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 35624749 - 35624691
Alignment:
Q  260 ttcatctttatcatcttcttgatgaagttattgcagcaga-ccccaacacaggttctaa 317  Q
    |||||||| |||||||||||| | |||||||||||||||| |||||||||| |||||||    
T  35624749 ttcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttctaa 35624691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 10187039 - 10187091
Alignment:
Q  251 ttcatcatgttcatctttatcatcttcttgatgaagttattgcagcagacccc 303  Q
    ||||||||  |||| ||||||||||||||||| ||||||||| ||||||||||    
T  10187039 ttcatcatagtcatatttatcatcttcttgatcaagttattgtagcagacccc 10187091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 29681337 - 29681289
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgca 294  Q
    |||| ||||||||||||||||| |||||||||||| | |||||||||||    
T  29681337 cacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca 29681289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 317
Target Start/End: Complemental strand, 19310595 - 19310523
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgcagcagacc-ccaacacaggttctaa 317  Q
    |||| |||||||| | ||||||||||||||||||  | ||||||||| ||||||||  ||||||| |||||||    
T  19310595 cacacttcatcatatacatctttatcatcttcttagttaagttattgtagcagaccttcaacacaagttctaa 19310523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 12729372 - 12729502
Alignment:
Q  20 aaattctgccgataattatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacac 119  Q
    |||||||||||| ||||||||||||| |||| |||| |||| |||| | ||||||||| ||| ||||||||||||  |||| |||| ||||||||||  |    
T  12729372 aaattctgccgaaaattatactaaataattctttcttttctctagt-gcacgagagaaattgacagaactttattcagtaaactacaattgtcgatatgc 12729470  T
Q  120 ttgatgtgaacgtgcaagtcacgtcaaggatt 151  Q
    ||| |||||| |||||||||| ||||||||||    
T  12729471 ttggtgtgaatgtgcaagtcatgtcaaggatt 12729502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 303
Target Start/End: Complemental strand, 28696085 - 28695947
Alignment:
Q  155 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatcacaattca 254  Q
    ||||||| ||||  ||||||||||||||||||||| ||| |||| ||||||||| |||||||||||  ||||||||||| ||   ||||       ||||    
T  28696085 ttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgc---attc-------ttca 28695996  T
Q  255 tcatgttcatctttatcatcttcttgatgaagttattgcagcagacccc 303  Q
    |||||||||| || |||||||||||| | ||||||||||| || |||||    
T  28695995 tcatgttcatattcatcatcttcttggtcaagttattgcaacaaacccc 28695947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 12729541 - 12729621
Alignment:
Q  155 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtg 235  Q
    |||||||||||| ||||||||||||  ||||||||| || |||| ||||||||| ||||||||| |  ||||||| |||||    
T  12729541 ttgcatccggttggcataactggtggaggcgaatcgtacctaaaggttagtgtgtcccacacactctttggaattcatgtg 12729621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 317
Target Start/End: Original strand, 44729228 - 44729385
Alignment:
Q  155 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatcacaattca 254  Q
    |||||||||||| |||||||| |   ||| |||| |||| |||| ||||||||  |||||||||||  ||||||||||||||||  |||||||           
T  44729228 ttgcatccggttggcataactcgcaggggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatca------t 44729321  T
Q  255 tcatgttcatctttatcatcttcttgatgaagttattgcagcagac-cccaacacaggttctaa 317  Q
    |||||||||| || || ||||||||||| ||||||||| |||| || | |||||||| ||||||    
T  44729322 tcatgttcattttcattatcttcttgatcaagttattgtagcaaactctcaacacagattctaa 44729385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 12729637 - 12729690
Alignment:
Q  270 tcatcttcttgatgaagttattgcagcaga-ccccaacacaggttctaaaatta 322  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||    
T  12729637 tcatcttcttgatcaaggtattgcagcagatccccaacacaggttctaacatta 12729690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 25953617 - 25953674
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgcagcagacccc 303  Q
    |||| |||||||| |||||||| || ||||||||| | ||||||||||| ||||||||    
T  25953617 cacacttcatcatattcatcttcattatcttcttggttaagttattgcatcagacccc 25953674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 217731 - 217861
Alignment:
Q  21 aattctgccgataattatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgtaagctaccattg-tcgatacac 119  Q
    ||||||||||| ||| || |||||| |||| |||| |||| |||||  ||||||||| ||| |||||| ||||||||||| ||||||||| |||||||||    
T  217731 aattctgccgaaaataattctaaataattctttcttttctctagttc-acgagagaaattggcagaacattattttgtaaactaccattgatcgatacac 217829  T
Q  120 ttgatgtgaacgtgcaagtcacgtcaaggatt 151  Q
    ||| |||||| ||||||||| | |||||||||    
T  217830 ttggtgtgaatgtgcaagtctcttcaaggatt 217861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 12239590 - 12239497
Alignment:
Q  155 ttgcatccggtttg-cataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatca 247  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||| |||| |||| |||||||||||  || |||||||||||||| |||||||    
T  12239590 ttgcatccggtttgacataactggtgggggcgaatcgaacctaaaggttaatgtgtcccacacacgctttgaaatttatgtgcacacttcatca 12239497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 12239757 - 12239628
Alignment:
Q  21 aattctgccgataattatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacact 120  Q
    ||||||||||| ||| ||| |||||||||| ||||  ||| ||||  ||| ||| || ||| || ||||||||| || || |||||||||||||||| ||    
T  12239757 aattctgccgaaaataatattaaattattctttcttatctctagta-tactagataaattgacaaaactttattctggaaactaccattgtcgatacgct 12239659  T
Q  121 tgatgtgaacgtgcaagtcacgtcaaggatt 151  Q
    || |||||| |||||||||||||||||||||    
T  12239658 tggtgtgaatgtgcaagtcacgtcaaggatt 12239628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 37469116 - 37469180
Alignment:
Q  254 atcatgttcatctttatcatcttcttgatgaagttattgcagcaga-ccccaacacaggttctaa 317  Q
    |||||||||||||| |||||||||||||| |||||||||| ||| | ||||||||||||||||||    
T  37469116 atcatgttcatcttcatcatcttcttgatcaagttattgctgcaaacccccaacacaggttctaa 37469180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 317
Target Start/End: Original strand, 24870567 - 24870720
Alignment:
Q  155 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatcacaattca 254  Q
    |||||||||||| |||||||||||  |||||||||||||||||| |||||  || |||| ||| |   |||||||||||||    |||       |||||    
T  24870567 ttgcatccggttggcataactggtaggggcgaatcgaacttaaaggttagcatgtcccatacaagatgtggaatttatgtg---tatt-------attca 24870656  T
Q  255 tcatgttcatctttatcatcttcttgatgaagttattgcagcaga-ccccaacacaggttctaa 317  Q
    ||||||  ||||| ||||||||||| || |||||||||||||| | |||||||| |||||||||    
T  24870657 tcatgtctatcttcatcatcttcttcatcaagttattgcagcaaacccccaacataggttctaa 24870720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 5436988 - 5437036
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgca 294  Q
    |||| ||||||||||||||||| |||||||||||| | |||||||||||    
T  5436988 cacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca 5437036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 24075684 - 24075621
Alignment:
Q  255 tcatgttcatctttatcatcttcttgatgaagttattgcagcagacccc-aacacaggttctaa 317  Q
    |||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  24075684 tcatattcatctttatcatcttcttaatcaagttattgcagcagacccctaacacaggttctaa 24075621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 11931984 - 11932066
Alignment:
Q  69 acgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 151  Q
    ||||||||||||| ||||| |||||| | ||| ||||||||||||||| ||||| ||||||   ||||||||| |||||||||    
T  11931984 acgagagaatttgacagaattttattctataaactaccattgtcgataaacttggtgtgaataagcaagtcacatcaaggatt 11932066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 28612288 - 28612144
Alignment:
Q  13 tgagtctaaattctgccgataattatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgtaagctaccattg-t 111  Q
    |||||| |||||||||||| ||||||||||||| |||| ||||  ||| ||| || ||||| | | ||| |||||| || |||||||  |||||||||      
T  28612288 tgagtcgaaattctgccgaaaattatactaaatcattctttcttatctctag-tgcacgaggggaattgacagaacattgttttgtatactaccattgaa 28612190  T
Q  112 cgatacacttgatgtgaacgtgcaagtcacgtcaaggattctattg 157  Q
    |||||  |||| |||||| || ||||||||||||||||||| ||||    
T  28612189 cgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattg 28612144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 11932104 - 11932187
Alignment:
Q  155 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcac 238  Q
    |||||||||||| |||||||| ||| ||||||||| ||| |||| ||||||||| || ||||| ||  || |||||||||||||    
T  11932104 ttgcatccggttggcataactagtgggggcgaatcaaacctaaaggttagtgtgtccaacacatgctttgaaatttatgtgcac 11932187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 28612034 - 28611983
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgcagca 297  Q
    |||| |||||||||||||| || |||||||||||||| ||||||||||||||    
T  28612034 cacacttcatcatgttcatattcatcatcttcttgatcaagttattgcagca 28611983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 24509291 - 24509343
Alignment:
Q  251 ttcatcatgttcatctttatcatcttcttgatgaagttattgcagcagacccc 303  Q
    ||||||||  ||||||| |||||||||||| | ||||| ||||||||||||||    
T  24509291 ttcatcatactcatcttcatcatcttcttggtcaagtttttgcagcagacccc 24509343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 42779936 - 42779878
Alignment:
Q  251 ttcatcatgttcatctttatcatcttcttgatgaagttattgcagcagaccccaacaca 309  Q
    ||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||    
T  42779936 ttcattatgttcatcttcatcatcttcttggtcaagttattgcagcagaccccaacaca 42779878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 16272183 - 16272130
Alignment:
Q  251 ttcatcatgttcatctttatcatcttcttgatgaagttattgcagcagacccca 304  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  16272183 ttcatcatgttcatctttatcatcttcttagtcaagttattgcagcagacccca 16272130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 716102 - 716045
Alignment:
Q  251 ttcatcatgttcatctttatcatcttcttgatgaagttattgcagcagaccccaacaca 309  Q
    |||||||| ||||| || |||||||||||| | |||||||||||||||||| |||||||    
T  716102 ttcatcatattcat-ttcatcatcttcttggtcaagttattgcagcagacctcaacaca 716045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 34681190 - 34681118
Alignment:
Q  69 acgagagaatttgtcagaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtca 140  Q
    ||||||||| ||| || |||||||||  |||| ||| ||||| ||||||| ||||||||||| ||||||||||    
T  34681190 acgagagaaattgacaaaactttattacgtaaactatcattgatcgatacgcttgatgtgaatgtgcaagtca 34681118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 3415610 - 3415667
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgcagcagacccc 303  Q
    |||| ||||||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  3415610 cacacttcatcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccc 3415667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 3425166 - 3425227
Alignment:
Q  254 atcatgttcatctttatcatcttcttgatgaagttattgcagcaga-ccccaacacaggttc 314  Q
    |||||||||||||| |||||||||||| | |||||||||||||||| |||||||||||||||    
T  3425166 atcatgttcatcttcatcatcttcttggtcaagttattgcagcagatccccaacacaggttc 3425227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 18670587 - 18670524
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgcagcagac-cccaacac 308  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||||    
T  18670587 cacacttcatcatgttcatctttatcatcttcttggtcaagttattgcaacagacgcccaacac 18670524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 20251439 - 20251523
Alignment:
Q  69 acgagagaatttgtcagaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattc 152  Q
    ||||||||| ||| |||||||||||| ||||| ||| ||||| ||||||||||||||||||| || |||| ||| |||| |||||    
T  20251439 acgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaaggcacatcaatgattc 20251523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 20251646 - 20251712
Alignment:
Q  251 ttcatcatgttcatctttatcatcttcttgatgaagttattgcagcagaccccaacacaggttctaa 317  Q
    ||||||||||||||||| |||||||||||  | ||  |||| |||||||||||||||||| ||||||    
T  20251646 ttcatcatgttcatcttcatcatcttcttagtcaaactattacagcagaccccaacacagattctaa 20251712  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 18736905 - 18736848
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgcagcagacccc 303  Q
    |||| ||||||| ||||||||| |||||||||||||  |||||||| |||||||||||    
T  18736905 cacacttcatcaagttcatcttaatcatcttcttgaccaagttattacagcagacccc 18736848  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 24391830 - 24391951
Alignment:
Q  34 attatactaaattattcgttctcttctttagttgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtg 133  Q
    |||||||||||| |||| |||| |||| |||| | | ||||||| ||| || ||||||||| ||||| ||| ||||||||||||  ||| |||| | |||    
T  24391830 attatactaaatcattctttcttttctctagt-gcatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtg-atgtg 24391927  T
Q  134 caagtcacgtcaaggattctattg 157  Q
    ||||||||  ||||||||| ||||    
T  24391928 caagtcacaccaaggattccattg 24391951  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 30020308 - 30020367
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgcagcagaccccaa 305  Q
    |||| ||||||||  ||||||| |||||||||||| | |||||||||||||||| |||||    
T  30020308 cacacttcatcatagtcatcttcatcatcttcttggtcaagttattgcagcagatcccaa 30020367  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 47071168 - 47071118
Alignment:
Q  255 tcatgttcatctttatcatcttcttgatgaagttattgcagcagaccccaa 305  Q
    ||||||||||||| |||||||||||  | ||||||||| ||||||||||||    
T  47071168 tcatgttcatcttcatcatcttcttagtcaagttattgtagcagaccccaa 47071118  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 18716232 - 18716175
Alignment:
Q  246 cacaattcatcatgttcatctttatcatcttcttgatgaagttattgcagcagacccc 303  Q
    |||| ||||||| ||||||||| ||||||||||||   |||||||| |||||||||||    
T  18716232 cacacttcatcaagttcatcttaatcatcttcttggccaagttattacagcagacccc 18716175  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 48779799 - 48779734
Alignment:
Q  182 ggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatca 247  Q
    |||||||||||| |||| ||||||||  |||||||||||  || ||||||| |||||| |||||||    
T  48779799 ggcgaatcgaacataaaggttagtgtatcccacacacgctttgaaatttatatgcacacttcatca 48779734  T

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