View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11741_low_5 (Length: 353)
Name: NF11741_low_5
Description: NF11741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11741_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 43225276 - 43224939
Alignment:
| Q |
13 |
agcagagaatcaaggtccttcatg-aacgtccaacgaatggttcttattaactggtcaacaagttgatttccatttccattaaaataggacgcatatagc |
111 |
Q |
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| T |
43225276 |
agcagagaatcaaggtcctttatggaacgtccaacgaatggttcttattaactggtcaacaagttgatttccatttccattaaaataggacgcatatagc |
43225177 |
T |
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| Q |
112 |
attgttgttgccgcactttattctcctccactctcccaaatcctttaccttttctcttaattaaaagctgcatattcattcttatatttatttaattaac |
211 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43225176 |
attgttgttgccgcactttattctcctccattctcccaaatcctttaccttttctcttaattaaaagctgcatattcattcttatatttat----ttaac |
43225081 |
T |
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| Q |
212 |
tcatgtggtaactcatcttccttacattagtatcttaataaataaattgttacagaaaatcaattgtgtgttgattggttgctgcattgttttgaggtat |
311 |
Q |
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|||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225080 |
tcatgtcgtaactcatcttccttacattagcatctgaataaataaattgttacagaaaatcaattgtgtgttgattggttgctgcattgttttgaggtat |
43224981 |
T |
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| Q |
312 |
taggcttgttcaaggtatgtatgtttggattttcatggcctt |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224980 |
taggcttgttcaaggtatgtatgtttggattttcatggcctt |
43224939 |
T |
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