View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11741_low_6 (Length: 351)
Name: NF11741_low_6
Description: NF11741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11741_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 5134355 - 5134691
Alignment:
| Q |
1 |
agatattgagtttgtgatgaaaccaaaccaaagctcgacattttcgttgcagcagcaacgaccatgtcgttttcagaatagatagcacctacacggaaac |
100 |
Q |
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| T |
5134355 |
agatattgagtttgtgatgaaaccaaaccaaagctcgacattttcgttgcagcggcaacgaccatgtcgttttcagaatagatagcacctacacggaaac |
5134454 |
T |
|
| Q |
101 |
cgggcaaacccaagtctttggagagactataaacgacatgaactctttccgagatgtcagcatcaaaatccttaagatcatttctttccttaagaatttc |
200 |
Q |
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| T |
5134455 |
cgggcaaacccaagtctttggagagactataaacgacatgaactctttccgagatgtcagcgtcaaaatccttaaaatcatttctttccttaaggatttc |
5134554 |
T |
|
| Q |
201 |
catgacgctaatgaagctcggagaggtaaaaactgtccctgagtaaatttcgtcgcttattaaatgcatgtctttgttgtctttgatgaagtcaatgaga |
300 |
Q |
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| T |
5134555 |
catgacgctaatgaagctcggagaggtaaaaactgtccctgagtaaatttcgtcgcttattaaatgcatgtctttgttgtctttgatgaagtcaatgaga |
5134654 |
T |
|
| Q |
301 |
aggtttaattcactctttgacattgtagtgcctagtg |
337 |
Q |
| |
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| T |
5134655 |
aggtttaattcactctttgacattgtagtgcctagtg |
5134691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 31 - 335
Target Start/End: Complemental strand, 40208164 - 40207854
Alignment:
| Q |
31 |
aagctcgacattttcgttgcagcagcaacgaccatgtcgttttcagaatagatagcacctacacggaaaccgggcaaacccaagtctttggagagactat |
130 |
Q |
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| T |
40208164 |
aagcttgacatcttcgtggcagcagcaacaaccgtatcattttcagagtagatggcgccaacgcggaaacctggcaaacccaagtctttggaaagactat |
40208065 |
T |
|
| Q |
131 |
aaacgacatgaactctttccgagatgt---cagcatcaa---aatccttaagatcatttctttccttaagaatttccatgacgctaatgaagctcggaga |
224 |
Q |
| |
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| || ||||||||||| || | || | |||| || | | |||| |||||||| || |||||||||||||||||||| ||||| | ||||| |
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| T |
40208064 |
agacaacatgaactctctcaaaaatattatcagcgtctttggagttgttaaagtcatttctgtctttaagaatttccatgacgctgatgaaatttggaga |
40207965 |
T |
|
| Q |
225 |
ggtaaaaactgtccctgagtaaatttcgtcgcttattaaatgcatgtctttgttgtctttgatgaagtcaatgagaaggtttaattcactctttgacatt |
324 |
Q |
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|| |||||| || || |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
40207964 |
ggaaaaaacagtgccggagtaaatctcgtcgcttatcaaatgcatgtctttgttttctttgataaagtcaacgagaaggtttaattcactccttgacatt |
40207865 |
T |
|
| Q |
325 |
gtagtgcctag |
335 |
Q |
| |
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|| |||||||| |
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| T |
40207864 |
gtggtgcctag |
40207854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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