View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11741_low_8 (Length: 311)
Name: NF11741_low_8
Description: NF11741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11741_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 45 - 303
Target Start/End: Original strand, 35766092 - 35766350
Alignment:
| Q |
45 |
atattcttttgcacgttcaccaacagaagcccaataccgttcccaggagttcgtttcattattttcaagttggttcaattcccatccatgagaagcataa |
144 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
35766092 |
atattcttttgcacgtttatcaacagaagcccaataacgttcccaggagtttgtttcatcattttcatgttggttcaattcccatccttgagaagcataa |
35766191 |
T |
|
| Q |
145 |
tttggctcaggaggctttgttacttgttctttttcttcttcatccccccatccagtaggtatgattccaagatcggcaaaggacttcttcacaaggagag |
244 |
Q |
| |
|
||||| |||| ||| ||| |||| | |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35766192 |
tttggttcagaaggttttcttacctcatctttttcctcttcgtccccccatccagtaggtacgattccaagatcggcaaaggacttcttcactaggagag |
35766291 |
T |
|
| Q |
245 |
aattatcgataattagagtcacgtcgcgtttttcttccatgttgtcactggcctatgct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35766292 |
aattatcgataattagagtcacgtcgcgtttttcttccatgttgtcactggcctctgct |
35766350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 35760612 - 35760768
Alignment:
| Q |
45 |
atattcttttgcacgttcaccaacagaagcccaataccgttcccaggagttcgtttcattattttcaagttggttcaattcccatccatgagaagcataa |
144 |
Q |
| |
|
||||||||||| | ||||| |||||| ||| | |||| ||||||| ||||| ||||||||||||||| |||||||| |||||||||| |||| ||||||| |
|
|
| T |
35760612 |
atattcttttgaatgttcaacaacaggagcacgatactgttcccaagagtttgtttcattattttcatgttggttcgattcccatccctgagcagcataa |
35760711 |
T |
|
| Q |
145 |
tttggctcaggaggctttgttacttgttctttttcttcttcatccccccatccagtaggt |
204 |
Q |
| |
|
|| || |||| |||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
35760712 |
ttcggttcagaaggctttgttac---ttctttttcttcttcgtccccccatccagtaggt |
35760768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 35755504 - 35755618
Alignment:
| Q |
83 |
gttcccaggagttcgtttcattattttcaagttggttcaattcccatccatgagaagcataatttggctcaggaggctttgttacttgttctttttcttc |
182 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |||| || |||||||||| ||| ||||||||||||||||| ||||||| | |||| |||||||||||| |
|
|
| T |
35755504 |
gttcccaagagtttgtttcattattttcatgttgatttgattcccatccctgaccagcataatttggctcagaaggctttctaacttcttctttttcttc |
35755603 |
T |
|
| Q |
183 |
ttcatccccccatcc |
197 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
35755604 |
ttcgtccccccatcc |
35755618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 35799092 - 35799201
Alignment:
| Q |
92 |
agttcgtttcattattttcaagttggttcaattcccatccatgagaagcataatttggctcaggaggctttgttacttgttctttttcttcttcatcccc |
191 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||| ||||| ||| |||||||||||| |||| ||||||||||| | ||| |||||||| ||||| |
|
|
| T |
35799092 |
agtttgtttcattattttcatgttggtttgattcgcatcccagagcagcataatttggttcagaaggctttgttaacttttc---gtcttcttcgtcccc |
35799188 |
T |
|
| Q |
192 |
ccatccagtaggt |
204 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35799189 |
ccatccagtaggt |
35799201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University